Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0596
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   127   3e-30
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   1.7  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   3.0  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   5.2  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  127 bits (307), Expect = 3e-30
 Identities = 56/79 (70%), Positives = 66/79 (83%)
 Frame = +3

Query: 27  MKLNVSYPATGCQKLFEVXDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQG 206
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 207 FPMKQGVLTNSRVRLLCQR 263
           FPMKQG+LTN RVRLL ++
Sbjct: 61  FPMKQGILTNGRVRLLLKK 79



 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 26/41 (63%), Positives = 31/41 (75%)
 Frame = +2

Query: 254 VSKGHSCYRPRRDGERKRKSVXGCIVDANLSVLALCYCAXG 376
           + KG SCYR R++GERKRKSV GCIVDAN+S L+L     G
Sbjct: 77  LKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKG 117


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 45  YPATGCQKLFEVXDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQ 203
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 60  CQKLFEVXDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQ 203
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 177 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 40
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 177 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 40
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 177 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 40
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 370 RTITKSQDREIGVNNTSTN*FTFSLSI 290
           R ++K+ + E G NN  T+ FTF  SI
Sbjct: 167 RRLSKTSEEEPGGNNNITSRFTFKTSI 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,720,387
Number of Sequences: 27780
Number of extensions: 161155
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)