Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0596
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.76 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 204 LACRCRXRHEVHSPSIHRLTDQPLLRRP-CAFRKRYEACARPPLRTTSGIPLPGTKRLT 31
           ++ R   RH VHS +   +  + LL+R  C  RK          R  +  PL    ++T
Sbjct: 52  ISSRRNGRHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSSRKQTIDPLSSNTQIT 110


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 RMGAEVEADQLGDEWKGYV 173
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 209 PDETGRPDK-QPXSSSVSKGHSCYRPRRDGERKRK 310
           P  TG   K QP S  ++    C++   +G +KRK
Sbjct: 167 PFRTGFEHKRQPTSIDLNAVRLCFQVFLEGSQKRK 201


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 209 PDETGRPDK-QPXSSSVSKGHSCYRPRRDGERKRK 310
           P  TG   K QP S  ++    C++   +G +KRK
Sbjct: 167 PFRTGFEHKRQPTSIDLNAVRLCFQVFLEGSQKRK 201


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 76  SNNFWHPVAGYETFN 32
           +NN ++P   Y TFN
Sbjct: 222 TNNLFYPYPPYGTFN 236


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 14  IDRSHEVKRFVPGNGMP 64
           I+ +HE  +++PG+ +P
Sbjct: 55  INETHENVKYLPGHKLP 71


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 60  CQKLFEVXDEHKLRIFYEKRMGAEVEAD 143
           CQ  F+        +  EKR G  VE D
Sbjct: 43  CQNWFDKFRSGDFSLKDEKRSGRPVEVD 70


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 192 CRXRHEVHSPSI 157
           CR RHE+ S  +
Sbjct: 522 CRPRHEIRSTDV 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,851
Number of Sequences: 438
Number of extensions: 1844
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)