Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0595
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   2.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    24   5.2  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    24   6.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    24   6.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    24   6.8  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    23   9.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    23   9.0  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    23   9.0  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 69  YNQICLFYHSCWVTGPAFVTTTGPXVLLIKILD 167
           Y  I   YHS WVT  A+   + P V+L  +L+
Sbjct: 491 YFLIMFVYHSSWVTSNAY---SSPTVVLSTVLN 520


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 62  IQIQPNMSLLPFVLGDWPRVRHNHW 136
           IQI+PN  L  +   ++ R+ +N W
Sbjct: 478 IQIEPNSDLTGYDYYEYKRLLYNEW 502


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 241 PWSEVVFXEHWTADGSQHVVR 179
           P +EVV  E W  D S+  VR
Sbjct: 184 PTAEVVNDEDWAVDTSEEAVR 204


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 217 EHWTADGSQHVVRG*RQSKILINKT 143
           E WT    ++ +RG R+  ILI K+
Sbjct: 52  EFWTKFAHEYYIRGLREQAILILKS 76


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 179 PNDMLAAVGCPVLXEDYFRP 238
           PND LA + C  L  DY  P
Sbjct: 56  PNDELAPLSCEGLGPDYENP 75


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 120 TRGQSPNTNGRRDIFGCI*IGMVKRREKFA*TXHNSSCRI 1
           T  +SP T+  R+I G +   +    EKF+    N S +I
Sbjct: 395 TVAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKI 434


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 160 ILINKTXGPVVVTNAGPVTQHEW 92
           +L+N+T G ++  + GP    EW
Sbjct: 90  LLLNETLGALIYDDPGPNILDEW 112


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 173 LTPNDMLAAVGCPVLXEDYFRP 238
           LT  D +  +GCPVL    + P
Sbjct: 537 LTIKDKIKLLGCPVLKHSKYAP 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,663
Number of Sequences: 5004
Number of extensions: 19744
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)