Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0595
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105...    28   1.5  
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    27   3.6  
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094...    27   4.7  
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840...    27   4.7  
04_04_0772 + 27970494-27972875                                         27   4.7  
02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394...    26   6.2  

>07_01_0142 +
           1054495-1054644,1054767-1055971,1056102-1056180,
           1056619-1056822
          Length = 545

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 35  NFSLRFTIPIQIQPNMSLLPFVLGDWPRVRHNHWPXRLVDQDFGLALTPNDMLAAVGCP 211
           N   R  IP+   P       ++GDW +  H     + +D   G AL P D L   G P
Sbjct: 146 NVYQRPAIPVPYPPPAGDFTLLVGDWYKAGHKQL-RQALDAGGGGALPPPDALLINGMP 203


>02_05_1219 +
           35011571-35011897,35012008-35013780,35013915-35014068,
           35014158-35014801
          Length = 965

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 194 PACRSGLAPIQNLDQQDXWASG 129
           P  RSG AP++ L +QD W  G
Sbjct: 126 PTKRSGEAPVKLLMEQDMWKEG 147


>07_03_0815 +
           21707061-21707112,21707394-21708286,21709289-21709459,
           21709880-21710143,21710404-21710421
          Length = 465

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 48  VLPYLFKYNQICLFYHSCWVTGPAFVTTTGPXVLLIKILDWR*PR 182
           V+P L      C F  S W+   A V      + +++ LDW  PR
Sbjct: 216 VVPRLKFLTVSCCFCSSTWLVAMAGVCIVAEELQVLRWLDWYCPR 260


>07_03_0602 +
           19881998-19882217,19882303-19882496,19883719-19884039,
           19885016-19885244,19885554-19885653,19886413-19886539,
           19886603-19886780,19886859-19886917,19887082-19887568,
           19887682-19887836,19887930-19888100,19888181-19888270,
           19888714-19888872,19888940-19889223,19889435-19889498
          Length = 945

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +2

Query: 119 VRHNHWPXRLVDQDFGLALTPNDMLAAVGCPVLXEDYFRPWRQL 250
           V  +HW     D DF     P+   A  GC    +D   PWR L
Sbjct: 580 VNDDHWSVHPADHDFPDNDMPHPDDADAGCVDDSDDDDDPWRPL 623


>04_04_0772 + 27970494-27972875
          Length = 793

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 192 WLPSAVQCSXKTTSDHGDNXR 254
           W P+A++ +  TT+D+ DN R
Sbjct: 581 WSPAAIKSAMMTTADYTDNLR 601


>02_01_0539 +
           3941189-3941896,3942110-3942394,3942508-3943394,
           3943473-3943643,3943726-3943744,3943763-3944014,
           3944100-3944138,3944244-3944282
          Length = 799

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +2

Query: 83  SLLPFVLGDWPRVRHNHWP-XRLVDQDFGLALTPN 184
           S  PFV GD P  R  +W   R    D G    PN
Sbjct: 192 SCTPFVFGDIPHPRARNWARARYQKHDDGTIFMPN 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,048,741
Number of Sequences: 37544
Number of extensions: 137451
Number of successful extensions: 326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)