Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0595
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    26   7.3  
U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical pr...    25   9.7  
L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    25   9.7  
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    25   9.7  
AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    25   9.7  

>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 36  TFLCVLPYLFKYNQICLFYHSCWVTG 113
           T  CVLPY+F Y  I   Y+ C +TG
Sbjct: 243 TIQCVLPYVF-YIPIYTLYYYCLLTG 267


>Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical
           protein Y48E1B.8 protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 110 WPRVRHNHWPXRLVDQDFGLA 172
           WPR+R  HWP   + + F  A
Sbjct: 126 WPRIRVFHWPTPSLYKPFSFA 146


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
           protease protein39 protein.
          Length = 951

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 99  CWVTGPAFVTTTGPXVLLIKILD 167
           C  T P  +T+TGP +LLI   D
Sbjct: 886 CGDTSPEVITSTGPELLLIMHTD 908


>U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical
           protein F35H10.7 protein.
          Length = 511

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 158 LDQQDXWASGCDERGASHPTRMVEETYLVV 69
           L+++D WA   +E    HP     +T  +V
Sbjct: 167 LEREDKWADNAEEPNKDHPLEEFAKTSFIV 196


>U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical
           protein F10G2.3 protein.
          Length = 417

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +3

Query: 9   TRNCEXFXRTFLCVLP------YLFKYNQICLFYHS 98
           T NC+   + F+C LP       ++ YN  C  Y++
Sbjct: 139 TENCDLSSKAFMCELPTTFSDSCIYNYNGYCYDYYA 174


>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 166 SKILINKTXGPVVVTNAGPVTQHEW*KRHIWLYLNRYGKTQRKVRXNXSQ 17
           +++ +N+T G  VVT   P  Q       I +Y N+YG+  RK   N  Q
Sbjct: 637 NRVAVNRTTGDFVVTERSPTHQ-------IQVY-NQYGQFLRKFGANILQ 678


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 166 SKILINKTXGPVVVTNAGPVTQHEW*KRHIWLYLNRYGKTQRKVRXNXSQ 17
           +++ +N+T G  VVT   P  Q       I +Y N+YG+  RK   N  Q
Sbjct: 637 NRVAVNRTTGDFVVTERSPTHQ-------IQVY-NQYGQFLRKFGANILQ 678


>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 36  TFLCVLPYLFKYNQICLFYHSCWVTGPAFVTTT 134
           + +CV P LF     C F+       PAF  +T
Sbjct: 165 SLVCVKPVLFSLQYSCWFFDPMTGKDPAFFVST 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,739,870
Number of Sequences: 27780
Number of extensions: 114352
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)