Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0595
         (331 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.55 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   6.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   6.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  KYNQICLFYHSCWVTGPAFVTTTGPXVLLIKILDW 170
           +Y+ + +++H     G   +   GP VLL+ +L W
Sbjct: 199 EYSMLLVYFHLQRHMGNFLIQVYGPCVLLV-VLSW 232


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 185 RSGLAPIQNLDQQDXWASGC 126
           +S + P+  +   D W +GC
Sbjct: 250 KSDIPPVAYVKALDVWMAGC 269


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 90  YHSCWVTGPAF 122
           Y+  WV GP F
Sbjct: 114 YYETWVLGPLF 124


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 90  YHSCWVTGPAF 122
           Y+  WV GP F
Sbjct: 80  YYETWVLGPLF 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,777
Number of Sequences: 438
Number of extensions: 1196
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)