Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0595
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43920.1 68416.m04701 ribonuclease III family protein similar...    25   9.3  
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti...    25   9.3  
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    25   9.3  

>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
            RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
            GI:6102610; contains Pfam profiles PF02170: PAZ domain,
            PF00636: RNase3 domain
          Length = 1531

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 139  GPVVVTNAGPV-TQHEW*KRHIW 74
            GP+ +   GP  T HE+ K+H+W
Sbjct: 1429 GPINMKKGGPRGTLHEFCKKHLW 1451


>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
           ligase SCF complex F-box subunit; identical to F-box
           containing protein ORE9 GI:15420162 from [Arabidopsis
           thaliana]
          Length = 693

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 2   IRHEEL*XVXANFSLRFTIPIQIQPNM-SLLPFVLGDWPRVRH 127
           I H+ L  +   F   F   + +     S L  +L  WPR+RH
Sbjct: 88  IDHQNLLALRLKFCFPFVESLNVYTRSPSSLELLLPQWPRIRH 130


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
            (ZZ type) family protein contains Pfam profiles PF02135:
            TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 66   KYNQICLFYHSCWVTGPAFVTTTGPXVLLIKI-LDWR 173
            K++ + + YH    T PAFVTT     L I+  L WR
Sbjct: 1511 KHSSMMVLYHLHNPTAPAFVTTCNVCHLDIESGLGWR 1547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,341,055
Number of Sequences: 28952
Number of extensions: 106315
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)