Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0592
         (467 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    35   1.0  
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    32   5.4  
UniRef50_Q98RR7 Cluster: Guanine nucleotide binding-like protein...    32   7.2  

>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 34.7 bits (76), Expect = 1.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 95   VQGRGGRGRPKKTWMECVNDDMKERGDSR 9
            V G   RGRP K W++C+++D K R   R
Sbjct: 970  VTGNRPRGRPPKRWLDCISEDCKARSIPR 998


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase; n=2;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 958

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 95  VQGRGGRGRPKKTWMECVNDDMKER 21
           + G+  RGRP K W +C+  D K R
Sbjct: 883 IHGKRPRGRPAKRWTDCIKADCKNR 907


>UniRef50_Q98RR7 Cluster: Guanine nucleotide binding-like protein;
           n=1; Guillardia theta|Rep: Guanine nucleotide
           binding-like protein - Guillardia theta (Cryptomonas
           phi)
          Length = 680

 Score = 31.9 bits (69), Expect = 7.2
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 323 LNSFYKLSREYIYAIM*MKDYDLNYYTGCLVYN--NFKLKTLIRFLKQN 183
           LN F KL+ +  Y I  +K YDL  +    +YN  N+ L  L+ F K+N
Sbjct: 268 LNIFTKLTEKTYYKINYIKVYDLKIHHFSNIYNLSNYNLLVLLCFKKKN 316


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,173,855
Number of Sequences: 1657284
Number of extensions: 6169379
Number of successful extensions: 11474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11472
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)