Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0592
         (467 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.7  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   9.9  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 116 NYNIMIFFVAMTRYQVNNVIXCYFVSETLL 205
           NY  +  ++ +  + V NV+ CY  SE +L
Sbjct: 518 NYQSLAHYLRVF-FTVFNVVHCYLASELVL 546


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 239 CLVYNNFKLKTLIRFLKQNNXRSHCLL 159
           CL Y N  ++ + +  K +N   H L+
Sbjct: 97  CLFYQNKLIEVISKLHKLDNKLKHMLI 123


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 65  SVDLFPLYLALN*DIKLNYNIMI 133
           S+D+FP       D K N+ I+I
Sbjct: 177 SIDVFPAVARWMQDPKTNHGILI 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,767
Number of Sequences: 336
Number of extensions: 1683
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)