Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0592
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    30   1.1  

>02_05_0640 -
           30558523-30559027,30559123-30559252,30559388-30559868,
           30560292-30560346,30560537-30560613,30561228-30561315,
           30561490-30561593,30562050-30562231,30562347-30563109,
           30563195-30563438,30564513-30564658,30565158-30565283,
           30565404-30565517,30565595-30565762,30566283-30566528,
           30566605-30566767,30566970-30567064,30567274-30567357,
           30567769-30568055,30568359-30568572,30568923-30569140,
           30569386-30569623,30570312-30571118,30571202-30571301,
           30571694-30571737,30571824-30571973
          Length = 1942

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  YRHLHTPSMSSSVDLFPLYLALN 100
           + H H P+ SS  DLF LYL +N
Sbjct: 30  HHHHHHPARSSIADLFTLYLGMN 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,507
Number of Sequences: 37544
Number of extensions: 156570
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)