Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0592
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   33   0.12 
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)                 29   1.5  
SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)                     29   2.5  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   27   5.9  
SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)                 27   7.7  

>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 98  LVQGRGGRGRPKKTWMECVNDDMKERG 18
           +++G+  RGRP+K W E + +D+K  G
Sbjct: 580 IIEGKRTRGRPRKNWHEVLREDLKLAG 606


>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 89  GRGGRGRPKKTWMECVNDDMKERG 18
           GR  +GRP+KTW +    D+K  G
Sbjct: 76  GRRMKGRPRKTWADATLSDLKTAG 99


>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
          Length = 492

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 92  QGRGGRGRPKKTWMECVNDDMKERG 18
           QG+  RGRP+ TW   ++ D K+ G
Sbjct: 436 QGKRKRGRPRNTWRRDLDADAKQMG 460


>SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 107 CPNLVQGRGGRGRPKKTWMECVND 36
           CP+LVQG  G GR  K W  C  D
Sbjct: 428 CPHLVQGVAGAGR-GKAWFVCDED 450


>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
          Length = 148

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 92  QGRGGRGRPKKTWMECVNDDMKERG 18
           QG+  RGRP+ TW   ++ D K  G
Sbjct: 109 QGKRKRGRPRNTWRRDLDADAKHMG 133


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 104 PNLVQGRGGRGRPKKTWMECVNDDMKERGDSRAE 3
           P   + RGG G P+ +W  C      ER D R +
Sbjct: 129 PRGAKKRGGGGEPQDSWSYCQRYHKCERCDKRVD 162


>SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 92  QGRGGRGRPKKTWMECVNDDMKERG 18
           +GR  +GRPK TW   V  +  E G
Sbjct: 199 EGRRKQGRPKTTWRRTVERERGEAG 223


>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
          Length = 1641

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 92  QGRGGRGRPKKTWMECVNDDMKERG 18
           +G+  RGRP+ TW   ++ D K  G
Sbjct: 191 KGKRKRGRPRNTWRRDLDADAKHMG 215



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 92  QGRGGRGRPKKTWMECVNDDMKERG 18
           +G+  RGRP+ TW   ++ D K  G
Sbjct: 551 KGKRKRGRPRNTWRRDLDADAKHMG 575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,562
Number of Sequences: 59808
Number of extensions: 201300
Number of successful extensions: 386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)