Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0592
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18610.1 68417.m02756 expressed protein contains Pfam profile...    29   2.1  
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    28   2.7  

>At4g18610.1 68417.m02756 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 191

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 46  HSIHVFFGRPLPPLPCT 96
           H   VFFG+P PP PCT
Sbjct: 87  HQACVFFGQPDPPGPCT 103


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 2   IRHENHPFLSYRHLHTPSMSSSVDLFPLYLALN*DIKLNYNIMIFFVAMTRYQVN 166
           +RH +H    + H H  ++SS   +FPL L  N   ++++ + +   A +   V+
Sbjct: 15  VRHHHH---HHHHHHHLALSSKARVFPLSLPCNFSSRVSFKLQLHCAASSSSSVS 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,319,858
Number of Sequences: 28952
Number of extensions: 137794
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)