Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0590
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   1.6  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    22   2.8  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    22   3.7  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.4  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 215 LKAQCLFCRQLTVFPGYTISSDTIFVFVR 129
           LKAQ    R  TV  G T+   T+F F R
Sbjct: 164 LKAQLWQNRYETVAHGMTVQKTTLFFFNR 192


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 279 GCTASDPVQNELQNSFSLQLLA*GTMPLLPSAH 181
           G  +  P  N+LQN   L+     T+ L PS H
Sbjct: 31  GDLSKKPSYNDLQNLKYLERCIKETLRLYPSVH 63


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 279 GCTASDPVQNELQNSFSLQLLA*GTMPLLPSAH 181
           G T   PV N+LQ    ++ +    + L PS H
Sbjct: 31  GDTKKKPVYNDLQELKYMERVIKEVLRLYPSVH 63


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 296 KIANFSITFYGSEL 337
           KIANF +TF+   L
Sbjct: 64  KIANFMLTFFNVSL 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,850
Number of Sequences: 336
Number of extensions: 1729
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)