Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0590
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 67 2e-12
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 60 2e-10
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 54 9e-09
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 44 1e-05
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 42 7e-05
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 32 0.057
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 27 1.2
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 26 3.8
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.8
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 6.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 8.7
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 66.9 bits (156), Expect = 2e-12
Identities = 35/79 (44%), Positives = 51/79 (64%)
Frame = +2
Query: 257 TGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+G L P SRDIKI +++++F+G L+++ +ELN G+RYGL+G NG GKS+ L +
Sbjct: 64 SGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLESVAA 123
Query: 437 REVXIPGTHXHIPSDSRNA 493
R+V P HI S NA
Sbjct: 124 RDVEYP---EHIDSYLLNA 139
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPG 457
L +D ++ R +VG NG GKS+ L + + I G
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEG 445
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 60.1 bits (139), Expect = 2e-10
Identities = 32/64 (50%), Positives = 38/64 (59%)
Frame = +2
Query: 281 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPGT 460
+S+DIKI + F G +L L L GRRYGL G NG GKS+ L L RRE+ IP T
Sbjct: 179 KSKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIP-T 237
Query: 461 HXHI 472
H I
Sbjct: 238 HITI 241
Score = 27.9 bits (59), Expect = 0.93
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 326 GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXL 430
G +L+ +++ R G+VG NG GKS+ L L
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLL 564
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 54.4 bits (125), Expect = 9e-09
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 257 TGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
TG+L P SRD+++ S++ +G L++D+ L L GRRYGL+ NG GKS+ L
Sbjct: 264 TGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLL 318
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 44.0 bits (99), Expect = 1e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2
Query: 305 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
+FS+ + G LL T L L G RYG+VG NGCGKS+ L
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLL 487
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 293 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSXLAXL 430
+K+ N S T+ ++ L + + L+ R ++G NG GKS+ + L
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVL 739
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 41.5 bits (93), Expect = 7e-05
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +2
Query: 290 DIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPGTH 463
D+ FS+ + LL T L L GRRYGL G NG GKS+ + + +V TH
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTH 491
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 293 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSXLAXL 430
IK+ + S + G+ L D +++ R ++G NG GKS+ + L
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVL 720
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 31.9 bits (69), Expect = 0.057
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 290 DIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPG 457
++ ++N S TF + L L+L G R LVG NG GKS+ L L + + G
Sbjct: 2 EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAG 59
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+L + G + VG +GCGKS+ L L R
Sbjct: 458 ILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFR 491
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 368 GRRYGLVGLNGCGKSSXLAXL 430
G+ GLVG NG GKS+ L L
Sbjct: 103 GQVLGLVGTNGIGKSTALKIL 123
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 406 STPIKSD*PISSPTIQLQESILK*LTPIESN*KVS 302
S+P++ P+ PT+QLQ S L L P E KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++L+ L + G+ VG +GCGKS+ + + R
Sbjct: 1135 KVLRGLNLTVKPGQFVAFVGSSGCGKSTTIGLIER 1169
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 8.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXI 451
P + I N ++++ + +L+D LE+ + +VG G GKS+ L R + +
Sbjct: 1175 PTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIM 1234
Query: 452 PG 457
G
Sbjct: 1235 SG 1236
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P IK ++S+ + + +L D + + + G+VG G GKS+ L R
Sbjct: 1219 PSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFR 1273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,756
Number of Sequences: 5004
Number of extensions: 30112
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -