Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0590
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457... 89 1e-18
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856... 86 1e-17
03_04_0206 - 18493178-18495310 61 6e-10
02_05_1297 - 35536193-35536312,35536405-35536467,35536610-355369... 55 4e-08
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 43 1e-04
01_06_0555 - 30182818-30183169,30183268-30183674,30183804-301847... 36 0.019
08_02_1616 + 28260204-28262555 36 0.025
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 35 0.044
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 34 0.076
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 31 0.54
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 31 0.54
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 31 0.54
01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148... 30 0.94
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 30 1.2
07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229... 29 2.2
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 29 2.2
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 29 2.2
05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,210... 29 2.2
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 29 2.9
01_06_0857 - 32507119-32507328,32507936-32508058,32508194-325082... 29 2.9
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 29 2.9
04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931... 28 3.8
01_06_0365 + 28767538-28767696,28768299-28768520,28768630-287688... 28 5.0
11_01_0202 + 1606317-1606487,1606743-1606805,1607045-1607116,160... 27 8.8
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 27 8.8
>08_02_1614 -
28243532-28244589,28245149-28245383,28245524-28245734,
28245834-28245907,28246465-28246665
Length = 592
Score = 89.4 bits (212), Expect = 1e-18
Identities = 41/67 (61%), Positives = 51/67 (76%)
Frame = +2
Query: 254 CTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLX 433
CTG LA HP SRDI I + S+TF+G +L+ D+ LELN GRRYGL+GLNGCGKS+ L +
Sbjct: 53 CTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG 112
Query: 434 RREVXIP 454
RE+ IP
Sbjct: 113 CRELPIP 119
>09_06_0365 -
22582467-22583524,22584407-22584641,22585474-22585684,
22585775-22585848,22585943-22586092
Length = 575
Score = 86.2 bits (204), Expect = 1e-17
Identities = 41/67 (61%), Positives = 48/67 (71%)
Frame = +2
Query: 254 CTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLX 433
CT L HP SRDI I + S+TF+G +LL DT LELN GRRYGL+GLNGCGKS L +
Sbjct: 36 CTAVLTSHPLSRDIHIESLSLTFHGHDLLLDTDLELNYGRRYGLLGLNGCGKSCLLKAIG 95
Query: 434 RREVXIP 454
RE+ IP
Sbjct: 96 CRELPIP 102
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 417 CLLXXDAVRXL-FQEHXDIFHLTREMPASD 503
CLL R L H DI+HLT E+ ASD
Sbjct: 89 CLLKAIGCRELPIPPHMDIYHLTHEIEASD 118
>03_04_0206 - 18493178-18495310
Length = 710
Score = 60.9 bits (141), Expect = 6e-10
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = +2
Query: 263 SLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRRE 442
S A +DI + NFS++ G ELL++ L ++ GRRYGLVG NG GKS+ L L R+
Sbjct: 148 SAAADDNIKDIVLENFSVSARGKELLKNASLRISHGRRYGLVGPNGMGKSTLLKLLSWRQ 207
Query: 443 VXIP 454
V +P
Sbjct: 208 VPVP 211
>02_05_1297 -
35536193-35536312,35536405-35536467,35536610-35536942,
35537098-35537184,35538337-35538399,35538604-35538750,
35538900-35539001,35539069-35539197,35539506-35539664,
35539726-35539967,35540317-35540506,35540692-35540907,
35541536-35541760
Length = 691
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
P RDI + NFS+T G +L+QD + L GR YGLVG NG GK+S L
Sbjct: 177 PAVRDIHMENFSVTVGGRDLIQDCTVTLAFGRHYGLVGRNGTGKTSFL 224
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +2
Query: 287 RDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIP 454
RD+ + + + G L + L + GRRYGLVG NG GK++ L L R++ +P
Sbjct: 87 RDVVVEDSDVWVQGVALFEGASLRVAHGRRYGLVGPNGKGKTTLLKLLHWRKLPVP 142
>01_06_0555 - 30182818-30183169,30183268-30183674,30183804-30184773,
30184829-30184902,30184941-30185084,30185186-30185365,
30185448-30185988,30186081-30186538,30187723-30187901,
30187998-30188052,30188217-30188468
Length = 1203
Score = 35.9 bits (79), Expect = 0.019
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+LQD L++ G GLVG +GCGKS+ + + R
Sbjct: 982 ILQDFSLDVKAGTSIGLVGRSGCGKSTIIGLIQR 1015
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+L+D L++ G+ LVG +G GKS+ +A + R
Sbjct: 381 VLKDFNLQIPAGQTVALVGSSGSGKSTAIALVQR 414
>08_02_1616 + 28260204-28262555
Length = 783
Score = 35.5 bits (78), Expect = 0.025
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ +D L GR LVG +GCGKSS LA + R
Sbjct: 539 QVFRDLSLRARAGRTLALVGASGCGKSSVLALVQR 573
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 34.7 bits (76), Expect = 0.044
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 293 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
+++ + ++ G +L+D E+ G + GLVG+NG GK++ L
Sbjct: 91 VRLEGIAKSYKGVTVLRDVSWEVQRGEKVGLVGVNGAGKTTQL 133
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 293 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRRE 442
+ I N F +L + L + G + ++G NGCGKS+ L + E
Sbjct: 434 LTIRNLEFGFGEEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGME 483
>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 33.9 bits (74), Expect = 0.076
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXI 451
PR DI + + + + + +L+ + +N G + G+VG G GKS+ + L R +
Sbjct: 1232 PRRGDIDVKDLKVRYRSNTPLILKGITISINSGEKIGVVGRTGSGKSTLVQALFRLVEPV 1291
Query: 452 PG 457
G
Sbjct: 1292 EG 1293
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+LQ L + G+ LVG +GCGKS+ ++ L R
Sbjct: 396 ILQGFSLSIPAGKVVALVGSSGCGKSTVISLLQR 429
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+L L + G+R LVG +G GKSS LA L R
Sbjct: 1011 ILDGFSLVIEPGQRVALVGPSGAGKSSVLALLLR 1044
>05_07_0003 + 26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ ++ L + G+ LVG +GCGKS+ +A L R
Sbjct: 1067 QIFRNLSLRIPSGKMVALVGESGCGKSTVIALLER 1101
>04_04_1331 - 32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ +D L++ GR LVG +G GKS+ +A + R
Sbjct: 1036 QIFKDFNLKIQAGRSQALVGASGSGKSTVIALIER 1070
>01_02_0042 - 10513799-10514152,10514252-10514545,10514630-10514893,
10515019-10515285,10515363-10516207,10516311-10516584,
10516694-10517219,10518009-10518247,10518370-10518591,
10518689-10518864,10518962-10519358
Length = 1285
Score = 30.3 bits (65), Expect = 0.94
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
E+ +D L ++ G+ LVG +G GKS+ ++ L R
Sbjct: 1057 EIFRDLCLTIHSGKTVALVGESGSGKSTAISLLQR 1091
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 329 SELLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
S +L+D LEL G ++G GCGKSS L
Sbjct: 630 SMILRDVSLELQKGIFVAIIGEVGCGKSSLL 660
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 338 LQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
L D ++ G + G++G G GKSS L L R
Sbjct: 1139 LNDVSFFISSGMQVGIIGRTGAGKSSILNALLR 1171
>07_03_0293 +
16321539-16321893,16322020-16322207,16322881-16322904,
16323497-16323550,16323854-16323944,16324715-16324815,
16324949-16324999,16326626-16326754,16327772-16327834,
16327928-16328171,16329628-16329776,16329855-16329944,
16330343-16330477,16330579-16330635,16331079-16331135,
16332299-16332336,16332532-16332601,16332971-16333207
Length = 710
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
E+L L + CG+ LVG +G GKS+ + L R
Sbjct: 446 EILNGLDLTIECGKITALVGPSGAGKSTVVQLLAR 480
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 326 GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPG 457
G E+L+ L++ G G++G +G GKS+ L L R PG
Sbjct: 439 GEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALNRLWEPAPG 482
>05_07_0004 + 26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ D L + G+ LVG +G GKS+ +A L R
Sbjct: 986 QIFSDFTLSIPSGKTVALVGQSGSGKSTAIALLER 1020
>05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,
2107120-2107645,2107817-2108090,2108197-2109056,
2109201-2109467,2109711-2109974,2110063-2110356,
2110455-2110814
Length = 1276
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ +D L + G+ LVG +G GKS+ ++ L R
Sbjct: 1046 QIFEDLCLTIQSGKTVALVGESGSGKSTAISLLQR 1080
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+L+ L + G+ LVG +GCGKS+ ++ + R
Sbjct: 374 ILRSFSLSIPAGKVVALVGSSGCGKSTVISLVQR 407
>01_06_0857 -
32507119-32507328,32507936-32508058,32508194-32508262,
32509963-32510238
Length = 225
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
+L+D L + G+ + L+G NGCGKS+ L
Sbjct: 63 VLKDCSLRVPPGQLWMLLGPNGCGKSTLL 91
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ D L + G+ LVG +G GKS+ +A L R
Sbjct: 1047 QIFSDFTLHIPSGKTVALVGESGSGKSTAIALLER 1081
>04_04_0118 - 22889608-22890816,22891990-22892261,22892306-22893131,
22893311-22893534,22893620-22893936,22894035-22894294,
22894723-22894923,22895015-22895190,22895445-22895718
Length = 1252
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+ +D L + G+ LVG +G GKS+ +A + R
Sbjct: 1027 VFKDFSLRIRAGQSQALVGASGSGKSTVIALIER 1060
>01_06_0365 + 28767538-28767696,28768299-28768520,28768630-28768868,
28769499-28770024,28770115-28770388,28770495-28771134,
28771220-28771448,28771682-28771948,28772031-28772294,
28772700-28773344
Length = 1154
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++L D L + G+ LVG +G GKS+ +A L R
Sbjct: 927 QVLCDFTLGIPSGKTVALVGESGSGKSTVIALLER 961
>11_01_0202 +
1606317-1606487,1606743-1606805,1607045-1607116,
1607244-1607351,1607497-1607538,1607965-1608018,
1608130-1608255,1608338-1608427,1608735-1608857,
1608963-1609070,1609412-1609573,1609655-1609711,
1609792-1609884
Length = 422
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 287 RDIKIANFSITFYGSELLQDTLLELNCG 370
RD+K+++F ++ ++ D LL CG
Sbjct: 135 RDLKVSDFGLSALSQQIKDDGLLHTTCG 162
>07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 492 AFLESDGICXCVPGIXTSRRXKXASXDDFPHPLSPTSPYLRPQ 364
AFL SD + + T K AS +D+PH T+P + P+
Sbjct: 1139 AFLFSDKMAALEVELGTVNGEKIASRNDWPHATLWTAPGVAPK 1181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,368
Number of Sequences: 37544
Number of extensions: 207377
Number of successful extensions: 478
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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