Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0590
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14) 99 2e-21
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 5e-08
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42) 36 0.019
SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41) 36 0.019
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 35 0.034
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 34 0.059
SB_42212| Best HMM Match : ABC_tran (HMM E-Value=0) 34 0.078
SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42) 33 0.10
SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0) 33 0.14
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 33 0.18
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38) 31 0.55
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.73
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21) 31 0.73
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0) 30 1.3
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0) 29 2.9
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 28 3.9
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0) 28 3.9
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41) 28 5.1
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 28 5.1
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 27 6.8
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44) 27 9.0
>SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)
Length = 441
Score = 98.7 bits (235), Expect = 2e-21
Identities = 43/67 (64%), Positives = 52/67 (77%)
Frame = +2
Query: 254 CTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLX 433
CTG L HP S+D+KI NFSITF+G ELL D LELN GR+YGL+GLNGCGKS+ L +
Sbjct: 43 CTGVLGSHPMSKDVKIDNFSITFHGVELLTDAKLELNTGRKYGLIGLNGCGKSTMLTAIG 102
Query: 434 RREVXIP 454
+RE+ IP
Sbjct: 103 KREIPIP 109
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3
Query: 456 EHXDIFHLTREMPASDKT 509
EH DIFHLT E+ ASDKT
Sbjct: 110 EHFDIFHLTSEIEASDKT 127
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +2
Query: 281 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXI 451
+S+DI+I NF + + LL+ L + GRRYGLVG NG GK++ L L +RE+ +
Sbjct: 203 KSQDIRIENFDLAYGNRSLLKGANLAIAFGRRYGLVGRNGIGKTTLLRTLSKRELFV 259
>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P ++K N S+ +Y G ++L + +++ G R G+ G G GKSS +A L R
Sbjct: 227 PAHGNVKFENVSLRYYEGGPQVLHNLNIDIKGGERVGVAGRTGAGKSSLVAALFR 281
>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1250
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P+ + + N S+ +Y E+L+D +N R G+ G G GKSS ++ L R
Sbjct: 1005 PKKGAVDLVNVSLAYYPGAPEVLKDVTFSINPAERVGIAGRTGAGKSSLVSALFR 1059
>SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42)
Length = 355
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXI 451
PR + + S+ +Y G ++L+D + ++ G+ G G GKSS +A L R
Sbjct: 114 PRHGALLFNHVSLRYYKDGPQVLKDVTFSIEPQQKIGIAGRTGAGKSSIVASLMRMPEAT 173
Query: 452 PG 457
PG
Sbjct: 174 PG 175
>SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)
Length = 474
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P + + N S+T+ G L+D ++ G + G+VG NG GKSS + L R
Sbjct: 61 PSAGHVVCDNVSLTYEKDGLRALKDLTFSVSAGEKIGIVGRNGSGKSSVIHALFR 115
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 35.1 bits (77), Expect = 0.034
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P + ++ S+ +Y G +L+D + +++G+VG G GKSS +A L R
Sbjct: 1461 PHDGALTFSHVSLQYYSGGPRVLKDVSFSIEPRQKFGIVGRTGAGKSSIVASLMR 1515
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 34.3 bits (75), Expect = 0.059
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+L+D L++ G R G+VG G GKSS A L R
Sbjct: 1351 VLRDITLDVRPGERVGIVGKTGAGKSSVFAALFR 1384
>SB_42212| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 301
Score = 33.9 bits (74), Expect = 0.078
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P ++++ + S+ +Y GS L++ + + + G+VG G GKSS +A L R
Sbjct: 56 PDRGELRLQDVSLAYYEGGSCALEEVNVRIQAKGKVGIVGRTGAGKSSLVAALFR 110
>SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42)
Length = 347
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXI 451
PR + + S+ +Y G ++L+ + ++ G+ G G GKSS +A L R
Sbjct: 106 PRHGAVSFSYVSLRYYSDGPQVLKGVTFSIEPQQKIGIAGRTGAGKSSIVASLMRMPEAS 165
Query: 452 PGTH 463
G H
Sbjct: 166 SGIH 169
>SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXI 451
PR + + S+ +Y G ++L+ + ++ G+ G G GKSS +A L R
Sbjct: 900 PRHGAVSFSYVSLRYYSDGPQVLKGVTFSIEPQQKIGIAGRTGAGKSSIVASLMRMPEAS 959
Query: 452 PGTH 463
G H
Sbjct: 960 SGIH 963
>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 844
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++L+ LE+N G+ LVG +GCGKS+ ++ L R
Sbjct: 683 KVLRGLSLEVNQGQTLALVGPSGCGKSTTVSLLER 717
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++L+ L + G+ LVG +GCGKS+ + + R
Sbjct: 133 KVLKGLHLTIRSGQTVALVGESGCGKSTLIKLVQR 167
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 293 IKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+ + + S+ ++ G+ +L+ LE+ + G+VG G GKSS +A L R
Sbjct: 995 LSVQDMSLVYHEGGARVLEGISLEVQPKEKVGIVGRTGAGKSSLVAALFR 1044
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 338 LQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
L D LE+ ++ G+ G G GKSS LA L R
Sbjct: 850 LDDITLEITAKQKVGIAGRTGAGKSSLLAALFR 882
>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 326 GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
G+ +L+ LE++ + G+VG G GKSS +A L R
Sbjct: 1088 GTRVLEGVNLEVDPKEKIGIVGRTGAGKSSLVAALFR 1124
>SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)
Length = 283
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 293 IKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPGTH 463
+ ++ S+ +Y G ++L+ + ++ G+ G G GKSS +A L R G H
Sbjct: 54 VSFSHVSLRYYSDGPQVLKGVTFSVEPQQKIGVAGRTGAGKSSIVASLMRMPEASTGIH 112
>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 618
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGS--ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P I N S +++ S E+L + + + G+VG G GKSS L+ L R
Sbjct: 30 PDKGKITFDNMSFSYHQSLPEVLHNVTCVIKPSEKVGVVGRTGAGKSSLLSTLFR 84
>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
Length = 1033
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+L+D + + + G+VG G GKSS LA L R
Sbjct: 891 VLKDVSVHIKPAEKVGIVGRTGAGKSSLLATLFR 924
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 30.3 bits (65), Expect = 0.96
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P + +IKI + + + S L+D ++ G + G+VG G GKSS L R
Sbjct: 896 PNTGNIKIDSLDLRYRESLPLALKDISCDIQPGEKIGIVGRTGAGKSSLSLALFR 950
>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1266
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 326 GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
G+ +L LE+ + G+VG G GKSS +A L R
Sbjct: 1038 GTRVLDGVSLEVLPKEKVGIVGRTGAGKSSLVAALFR 1074
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 326 GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
G E+L+ + + G++ G+VG G GKSS + + R
Sbjct: 1184 GHEVLKRISVHIKDGQKVGVVGRTGAGKSSLVRAIYR 1220
>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 672
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+++ E+N G + G+VG G GKS+ L R
Sbjct: 437 VIKKLTFEINSGEKIGIVGRTGAGKSTLSLALFR 470
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+L++ + + G+VG G GKSS LA L R
Sbjct: 772 VLKNVKFSIRNNEKVGIVGRTGAGKSSLLAVLFR 805
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +2
Query: 305 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRR------EVXIPGTHX 466
+FS G L + L + G +VG GCGKS+ L+ L EV + G+
Sbjct: 553 SFSWDVTGQPTLHNINLNIPDGSLVAVVGQVGCGKSTLLSALLGETEKVTGEVYVKGSVA 612
Query: 467 HIPSDS--RNACFR 502
++P + +NA R
Sbjct: 613 YVPQQAWIQNATLR 626
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
P I+I +F + + + +L++ +++ G + G+VG G GKS+ L R
Sbjct: 1327 PDKGRIQIEDFDLRYRANLPLVLKNISVDIQPGEKIGIVGRTGAGKSTLTLALFR 1381
>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1636
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 326 GSELLQDTLLELNC--GRRYGLVGLNGCGKSSXLAXLXRREVXIPGT 460
G+ LL L L G +GL+G+NG GK++ L E GT
Sbjct: 1265 GASLLAVDHLSLGVPMGECFGLLGINGAGKTTTFRMLTGDETMTSGT 1311
>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
Length = 336
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 305 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
NF T+Y +L++ + G+ LVG +G GKS+ + L R
Sbjct: 147 NFFGTYYRKPVLKNISFTVFPGQTLALVGNSGGGKSTIIRLLYR 190
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 368 GRRYGLVGLNGCGKSSXLAXLXR 436
G + G+VG NG KSS LA L R
Sbjct: 830 GEKVGIVGRNGLEKSSLLAALLR 852
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 368 GRRYGLVGLNGCGKSSXLAXLXRREVXIPGTHXHIP 475
G GLVG NG GKS+ L L ++ G H P
Sbjct: 111 GEVLGLVGTNGIGKSTALKILAGKQKPNLGRHDTPP 146
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++L L + G+ LVG +GCGKS+ + + R
Sbjct: 668 KVLNGLSLTVRSGQTVALVGESGCGKSTVIKLIQR 702
>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 296 KIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
K+ N S + G+E L+ D L G+ + G+ GCGK+S L
Sbjct: 1546 KLINVSYSIPGTEEPLVADLDLVFARGQNVLITGMAGCGKTSLL 1589
>SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44)
Length = 322
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 314 ITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXL 430
IT G ++ E+ G + G NGCGKSS L
Sbjct: 75 ITPCGDVVVSSLAFEMQPGMHLLITGPNGCGKSSLFRIL 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,486
Number of Sequences: 59808
Number of extensions: 229251
Number of successful extensions: 398
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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