Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0590
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60790.1 68418.m07627 ABC transporter family protein similar ... 96 1e-20
At3g54540.1 68416.m06035 ABC transporter family protein similar ... 55 2e-08
At1g64550.1 68414.m07317 ABC transporter family protein similar ... 47 8e-06
At5g09930.1 68418.m01148 ABC transporter family protein 40 7e-04
At5g64840.1 68418.m08157 ABC transporter family protein 40 0.001
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu... 33 0.084
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 32 0.20
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 32 0.20
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 32 0.20
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 31 0.34
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 31 0.34
At2g41700.1 68415.m05151 ABC transporter family protein similar ... 30 0.79
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu... 30 1.0
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 30 1.0
At3g13100.1 68416.m01640 ABC transporter family protein similar ... 29 1.4
At5g10930.1 68418.m01268 CBL-interacting protein kinase 5 (CIPK5... 29 1.8
At5g02270.1 68418.m00150 ABC transporter family protein NBD-like... 29 1.8
At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK... 29 2.4
At4g33460.1 68417.m04753 ABC transporter family protein ABC-type... 29 2.4
At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu... 29 2.4
At5g46540.1 68418.m05730 ABC transporter family protein contains... 28 3.2
At5g13610.1 68418.m01576 expressed protein 27 5.5
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 5.5
At4g18050.1 68417.m02686 ABC transporter family protein contains... 27 7.3
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 27 7.3
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein... 27 9.7
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein... 27 9.7
At5g23350.1 68418.m02731 GRAM domain-containing protein / ABA-re... 27 9.7
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 27 9.7
>At5g60790.1 68418.m07627 ABC transporter family protein similar to
ABC transporter homolog PnATH GI:7573600 from [Populus
nigra]
Length = 595
Score = 96.3 bits (229), Expect = 1e-20
Identities = 41/67 (61%), Positives = 54/67 (80%)
Frame = +2
Query: 254 CTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLX 433
CTG L HP+SRDI+I + S+TF+G +L+ D++LELN GRRYGL+GLNGCGKS+ L +
Sbjct: 56 CTGVLCSHPQSRDIRIESLSVTFHGYDLIVDSMLELNYGRRYGLLGLNGCGKSTLLTAIG 115
Query: 434 RREVXIP 454
RRE+ IP
Sbjct: 116 RREIPIP 122
>At3g54540.1 68416.m06035 ABC transporter family protein similar to
ABC50 GI:10863747 from [Rattus norvegicus]
Length = 723
Score = 55.2 bits (127), Expect = 2e-08
Identities = 24/56 (42%), Positives = 39/56 (69%)
Frame = +2
Query: 287 RDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIP 454
+DI I +FS++ G ELL++ + ++ G+RYGL+G NG GKS+ L L R++ +P
Sbjct: 161 KDITIESFSVSARGKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVP 216
>At1g64550.1 68414.m07317 ABC transporter family protein similar to
ABC transporter protein GB:AAF31030 GI:6899653 from
[Leishmania major]
Length = 715
Score = 46.8 bits (106), Expect = 8e-06
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +2
Query: 287 RDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXL 421
RDI + NF+++ G +L+ D + L+ GR YGLVG NG GK++ L
Sbjct: 173 RDIHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFL 217
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 40.3 bits (90), Expect = 7e-04
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 284 SRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRRE 442
S +++ N S ++ G +L+D E+ G + GL+G+NG GK++ L + +E
Sbjct: 81 SSGVRLENISKSYEGITVLKDVTWEVKKGEKVGLIGVNGAGKTTQLRIITGQE 133
Score = 30.3 bits (65), Expect = 0.79
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 293 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPG 457
+ + N F L L + G + ++G NGCGKS+ L + E + G
Sbjct: 411 VTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMRG 465
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +2
Query: 284 SRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRRE 442
S +K+ N ++ G +L+D E+ G + GLVG+NG GK++ L + +E
Sbjct: 95 SSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVGLVGVNGAGKTTQLRIITGQE 147
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 293 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPG 457
+ + N F L + L + G + ++G NGCGKS+ L + E + G
Sbjct: 425 VNVKNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKG 479
>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1273
Score = 33.5 bits (73), Expect = 0.084
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 290 DIKIANFSITFY---GSELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
DI++ + S T+ G ++ +D L + G+ LVG +G GKS+ ++ L R
Sbjct: 1026 DIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQR 1077
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ QD L + G+ LVG +G GKS+ +A L R
Sbjct: 1064 QIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQR 1098
>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
[Coptis japonica] GI:14715462, MDR-like p-glycoprotein
[Arabidopsis thaliana] GI:24324262; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1286
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ QD L + G+ LVG +G GKS+ +A L R
Sbjct: 1058 QIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQR 1092
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ +D L G+ LVG +GCGKSS ++ + R
Sbjct: 1040 QIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQR 1074
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 290 DIKIANFSITFYGS---ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
DI++ + S T+ ++ +D L + G+ LVG +G GKS+ ++ L R
Sbjct: 984 DIELCHISFTYQTRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVISLLQR 1035
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 290 DIKIANFSITFYGS---ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
DI++ + S T+ ++ +D L + G+ LVG +G GKS+ ++ L R
Sbjct: 1031 DIELRHLSFTYPARPDIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQR 1082
>At2g41700.1 68415.m05151 ABC transporter family protein similar to
ATP-binding cassette transporter ABCA1 GI:18031705 from
[Arabidopsis thaliana]
Length = 1822
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 338 LQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIPGT 460
+Q + G +G +G NG GK++ L+ L E GT
Sbjct: 1414 VQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGT 1454
>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1229
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 290 DIKIANFSITFYGS---ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
DI++ + S T+ ++ +D + G+ LVG +G GKS+ ++ L R
Sbjct: 983 DIELCHISFTYQTRPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVISLLQR 1034
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSELLQDTLLELNC----GRRYGLVGLNGCGKSSXLAXLXR 436
P +I I N + YG L L L C G + G+VG GCGKS+ + L R
Sbjct: 1214 PSRGEITICNLQVR-YGPHLPM-VLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFR 1268
>At3g13100.1 68416.m01640 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1493
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 278 PRSRDIKIANFSITFYGSELLQDTLLELNC----GRRYGLVGLNGCGKSSXLAXLXR 436
P +I I N + YG L L L C G + G+VG GCGKS+ + L R
Sbjct: 1236 PCRGEITICNLQVR-YGPHLPM-VLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFR 1290
>At5g10930.1 68418.m01268 CBL-interacting protein kinase 5 (CIPK5)
identical to CBL-interacting protein kinase 5
GP|9280632|gb|AAF86504 [Arabidopsis thaliana]
Length = 445
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 290 DIKIANFSITFYGSELLQDTLLELNCG 370
D+KI++F ++ ++LQD LL CG
Sbjct: 148 DLKISDFGLSALPEQILQDGLLHTQCG 174
>At5g02270.1 68418.m00150 ABC transporter family protein NBD-like
protein POP, Arabidopsis thaliana, EMBL:AF127664
Length = 328
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXRREVXIP 454
L++D + LN R LVG NG GK++ L L + + P
Sbjct: 37 LIEDFSITLNSSDRCLLVGSNGAGKTTILKILGGKHMVEP 76
>At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK25)
identical to CBL-interacting protein kinase 25
[Arabidopsis thaliana] gi|17646697|gb|AAL41008
Length = 488
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 290 DIKIANFSITFYGSELLQDTLLELNCG 370
D+K+++F ++ ++LQD LL CG
Sbjct: 178 DLKVSDFGLSALPEQILQDGLLHTQCG 204
>At4g33460.1 68417.m04753 ABC transporter family protein ABC-type
transport protein sll1623 -Synechocystis,PIR2:S74812
Length = 271
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXL 430
+L+D + G+ + ++G NGCGKS+ L L
Sbjct: 59 ILRDCSFRIPSGQLWMILGPNGCGKSTLLKIL 90
>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]; contains Pfam profiles
PF00005: ABC transporter and PF00664: ABC transporter
transmembrane region; identical to cDNA MDR-like
p-glycoprotein (At3g28860) GI:24324261
Length = 1252
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+ +D L + G LVG +G GKSS +A + R
Sbjct: 1027 VFRDFNLRIRAGHSQALVGASGSGKSSVIAMIER 1060
>At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ D L ++ G+ LVG +G GKS+ ++ L R
Sbjct: 1021 QIFSDLCLTISSGQTVALVGESGSGKSTVISLLER 1055
>At5g13610.1 68418.m01576 expressed protein
Length = 402
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 150 YHFRLRSSHEPPASCFCR*LAPSSS 76
+HF LRSS P CF +A S+S
Sbjct: 38 FHFSLRSSSNIPTRCFSNVVAKSNS 62
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+ D L++ G+ LVG +G GKS+ ++ L R
Sbjct: 376 IFDDLCLKIPAGKTVALVGGSGSGKSTVISLLQR 409
>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1281
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 332 ELLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
++ +D L + G+ LVG +G GKS+ ++ + R
Sbjct: 1009 QIFRDLCLTIPSGKTVALVGESGSGKSTVISMIER 1043
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+ D L++ G+ LVG +G GKS+ ++ L R
Sbjct: 293 IFDDLCLKIPSGKTVALVGGSGSGKSTVISLLQR 326
>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
(ZWICHEL) identical to kinesin-like protein GI:2224925
from [Arabidopsis thaliana]
Length = 1260
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 287 RDIKIANFSITFYGSELLQDTLLEL 361
RD K +FS+ Y EL QDTL++L
Sbjct: 1002 RDSKRFSFSLKAYMVELYQDTLVDL 1026
>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
(ZWICHEL) identical to kinesin-like protein GI:2224925
from [Arabidopsis thaliana]
Length = 1259
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 287 RDIKIANFSITFYGSELLQDTLLEL 361
RD K +FS+ Y EL QDTL++L
Sbjct: 1001 RDSKRFSFSLKAYMVELYQDTLVDL 1025
>At5g23350.1 68418.m02731 GRAM domain-containing protein /
ABA-responsive protein-related contains similarity to
ABA-responsive protein in barley (GI:4103635) [Hordeum
vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam
PF02893: GRAM domain
Length = 280
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 224 SF*LKAQCLFCRQLTVFPGYTISSDTI 144
SF A CLF P YT+SS TI
Sbjct: 13 SFVSTASCLFVFPFKYLPTYTVSSSTI 39
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 335 LLQDTLLELNCGRRYGLVGLNGCGKSSXLAXLXR 436
+ D L + G+ LVG +G GKS+ ++ L R
Sbjct: 355 IFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQR 388
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,340,400
Number of Sequences: 28952
Number of extensions: 157965
Number of successful extensions: 400
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -