Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0587
         (518 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q19P03 Cluster: Mitochondrial ribosomal protein L2; n=1...   133   2e-30
UniRef50_Q8MYY5 Cluster: RE45450p; n=6; Endopterygota|Rep: RE454...    79   8e-14
UniRef50_Q2LZ31 Cluster: GA20496-PA; n=2; Diptera|Rep: GA20496-P...    79   8e-14
UniRef50_O45110 Cluster: Putative uncharacterized protein; n=2; ...    39   0.079
UniRef50_A3GFQ0 Cluster: Putative uncharacterized protein; n=2; ...    32   9.0  

>UniRef50_Q19P03 Cluster: Mitochondrial ribosomal protein L2; n=1;
           Bombyx mori|Rep: Mitochondrial ribosomal protein L2 -
           Bombyx mori (Silk moth)
          Length = 260

 Score =  133 bits (322), Expect = 2e-30
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = +3

Query: 255 RNLHVGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVXK 434
           RNLHVGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVV K
Sbjct: 42  RNLHVGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVAK 101

Query: 435 GI 440
           GI
Sbjct: 102 GI 103



 Score = 83.4 bits (197), Expect = 3e-15
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 133 MVNLPNNLPSTVLCLSFKIKYIMALNRLFSNLTIATAMVA 252
           MVNLPNNLPSTVLCLSFKIKYIMALNRLFSNLTIATAMVA
Sbjct: 1   MVNLPNNLPSTVLCLSFKIKYIMALNRLFSNLTIATAMVA 40



 Score = 35.9 bits (79), Expect = 0.56
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +2

Query: 470 WIDWYRXGPTEGP 508
           WIDWYR GPTEGP
Sbjct: 113 WIDWYRVGPTEGP 125


>UniRef50_Q8MYY5 Cluster: RE45450p; n=6; Endopterygota|Rep: RE45450p
           - Drosophila melanogaster (Fruit fly)
          Length = 294

 Score = 78.6 bits (185), Expect = 8e-14
 Identities = 32/47 (68%), Positives = 42/47 (89%)
 Frame = +3

Query: 300 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVXKGI 440
           +EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+V KGI
Sbjct: 35  VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGI 81


>UniRef50_Q2LZ31 Cluster: GA20496-PA; n=2; Diptera|Rep: GA20496-PA -
           Drosophila pseudoobscura (Fruit fly)
          Length = 297

 Score = 78.6 bits (185), Expect = 8e-14
 Identities = 32/47 (68%), Positives = 42/47 (89%)
 Frame = +3

Query: 300 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVXKGI 440
           +EKP+PG G+ +RRIVHFPE+YTV PL++T+LAGRDP +GR+V KGI
Sbjct: 37  VEKPQPGAGQQFRRIVHFPEEYTVAPLKITHLAGRDPVSGRMVAKGI 83


>UniRef50_O45110 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 321

 Score = 38.7 bits (86), Expect = 0.079
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 360 QYTVKPLEVTNLAGRDPETGRVVXKGI 440
           QYT KPL +  L GRDPETGR V + I
Sbjct: 52  QYTHKPLRINRLGGRDPETGRKVNQHI 78


>UniRef50_A3GFQ0 Cluster: Putative uncharacterized protein; n=2;
           Pichia stipitis|Rep: Putative uncharacterized protein -
           Pichia stipitis (Yeast)
          Length = 636

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
 Frame = -1

Query: 392 ICNF*RFYCILFRKMYNTPVTFSETRF-RLFYIGFTRRMNNTNVKISLATIAVAM---VK 225
           +CN    YC + + +Y+   +F +  F R   +G    + N+  K+++A  A+A+   +K
Sbjct: 485 VCNNPEDYCEVQKSLYHHESSFDDILFRRCIRVGDQFHLPNSITKLTIAGDALAIEDTIK 544

Query: 224 LEKSLFKAIIYLILKLKH 171
           L ++L++  +Y +    H
Sbjct: 545 LPENLYELDLYDVAGFSH 562


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,078,169
Number of Sequences: 1657284
Number of extensions: 9174570
Number of successful extensions: 19774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19773
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)