Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0587
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    31   0.078
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   0.96 
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   1.7  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   5.1  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           25   6.8  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   9.0  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.0  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 31.5 bits (68), Expect = 0.078
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 240 CDGGERNLHVGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKP 377
           C    ++LHV V     KP IE+P+  +G   R  V++ E+   +P
Sbjct: 64  CQKTRKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEP 109


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 245  IAVAMVKLEKSLFKAIIYLILKLK 174
            + +  +K+EKSL+K   YL L LK
Sbjct: 1061 LPILSIKIEKSLYKGFCYLYLTLK 1084


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 96  YLHNLLIHV*NHEAYKLYLEVRLS 25
           YLH LL+ + NH   K YLE RLS
Sbjct: 861 YLHLLLVSM-NHLIKKYYLEARLS 883


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 252 ERNLHVGVVHSASKPNIEKPKPGFG 326
           E+ +H G   +A+ P  E P  GFG
Sbjct: 127 EKAMHPGHKSNANSPTSESPSKGFG 151


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 181 FKIKYIMALNRLFSNLTIATAMVASEIFTLVLFILRVNPI*KSRNLVSEK 330
           F  +Y+   N+ FSN TI+ +  A+ + ++  FIL  NP+  ++  V  K
Sbjct: 87  FMKEYVDRENK-FSNETISKSSAAALMTSMENFILFTNPVYHNKLQVPSK 135


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 315 PGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPET 416
           P +   Y+ I H  +Q   +P+E T+ A   P T
Sbjct: 31  PDYDAEYQFINHHMQQLLTRPVEGTHSASVHPST 64


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 446 PPDTFXDHTSCFWIPSS 396
           PP+T  D ++ FW+P++
Sbjct: 170 PPETEQDASTLFWVPAN 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,347
Number of Sequences: 5004
Number of extensions: 40547
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)