Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0587
         (518 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    30   5.6  
L08961-1|AAC41766.1|  600|Homo sapiens tyrosine kinase protein.        29   9.8  

>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 252  ERNLHVGVVHSAS-KPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPE 413
            E  +H  ++ S    P++    P   +S +  VH P++  +KP++V     R PE
Sbjct: 1112 EEKIHSPIIRSEPFSPSLRPEPPKHPESIKAPVHLPQRPEMKPVDVGRPVIRPPE 1166


>L08961-1|AAC41766.1|  600|Homo sapiens tyrosine kinase protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 448 LLRIPLX---TTRPVS-GSLPARFVTSKGFTVYCSGKCTIRL*LFPKPGFGFSILGLLAE 281
           LL++P+    T RP++  S+  R  + K   + C  KCT+     PK G  FS+L L  E
Sbjct: 486 LLKLPILGSRTMRPMTIFSMATRLSSPKTAWMNCMKKCTLAGEPIPKTGPTFSVLRLQLE 545


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,725,680
Number of Sequences: 237096
Number of extensions: 1381423
Number of successful extensions: 2734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2734
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)