Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0587
         (518 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113486-1|AAM29491.1|  294|Drosophila melanogaster RE45450p pro...    79   5e-15
AE014296-1910|AAF50091.1|  294|Drosophila melanogaster CG7636-PA...    79   5e-15
AE014134-966|AAF52285.1|  447|Drosophila melanogaster CG11029-PA...    28   6.6  

>AY113486-1|AAM29491.1|  294|Drosophila melanogaster RE45450p
           protein.
          Length = 294

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 32/47 (68%), Positives = 42/47 (89%)
 Frame = +3

Query: 300 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVXKGI 440
           +EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+V KGI
Sbjct: 35  VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGI 81


>AE014296-1910|AAF50091.1|  294|Drosophila melanogaster CG7636-PA
           protein.
          Length = 294

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 32/47 (68%), Positives = 42/47 (89%)
 Frame = +3

Query: 300 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVXKGI 440
           +EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+V KGI
Sbjct: 35  VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGI 81


>AE014134-966|AAF52285.1|  447|Drosophila melanogaster CG11029-PA
           protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 112 GYVNWKSMVNLPNNLP-STVLCLSFKIKYIMALNRLFSNLTIATAMVAS 255
           G  NW+  V LPN L         F +   + +N   S L IA  M+ S
Sbjct: 169 GLANWRRFVTLPNILKIFNPKLYGFAVSNSLVINHRSSRLNIAEPMIMS 217


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,673,534
Number of Sequences: 53049
Number of extensions: 415193
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)