Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0587
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    39   0.002
U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion transpo...    28   4.6  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    28   4.6  
Z68117-5|CAA92177.2|  303|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 360 QYTVKPLEVTNLAGRDPETGRVVXKGI 440
           QYT KPL +  L GRDPETGR V + I
Sbjct: 52  QYTHKPLRINRLGGRDPETGRKVNQHI 78


>U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical
           protein F14D12.5 protein.
          Length = 652

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 311 ETWFRKKLQAYCTF 352
           ETW +KK+  YCTF
Sbjct: 18  ETWVKKKINNYCTF 31


>AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion
           transporter SULP-2 protein.
          Length = 652

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 311 ETWFRKKLQAYCTF 352
           ETW +KK+  YCTF
Sbjct: 18  ETWVKKKINNYCTF 31


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -2

Query: 505 TLSRPXSVPVYPXDICVLYLLRIPLXTTRPVSGSLPARFVTSK 377
           T S+P +VP +P ++C+    ++P  ++    GSL    ++++
Sbjct: 558 TASKPHAVPFHPSEMCLSAFRKVPESSSISGLGSLSTSILSTQ 600


>Z68117-5|CAA92177.2|  303|Caenorhabditis elegans Hypothetical
           protein F45E6.1 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 184 KIKYIMALNRLFSNLTIATAMVASEIFTLVLFI 282
           K ++I  L +LF+NL I  +++ + IF  ++FI
Sbjct: 84  KSEWIRFLYKLFTNLLIHGSLIVATIFYYLIFI 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,279,838
Number of Sequences: 27780
Number of extensions: 220981
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)