Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0587
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.7  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   7.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   7.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.6  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 336 RRIVHFPEQYTVKPLEVT 389
           R +VH P ++ V+P +V+
Sbjct: 699 RLVVHVPPRWIVEPTDVS 716


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 326 KKLQAYCTFS*TIYSKTFRSYKSSWKGSRNRTCGX*RYPE 445
           K+ + Y T S ++ ++T     +S + SR R+C   R  E
Sbjct: 194 KESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNRE 233


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 326 KKLQAYCTFS*TIYSKTFRSYKSSWKGSRNRTCGX*RYPE 445
           K+ + Y T S ++ ++T     +S + SR R+C   R  E
Sbjct: 205 KESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNRE 244


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 326 KKLQAYCTFS*TIYSKTFRSYKSSWKGSRNRTCGX*RYPE 445
           K+ + Y T S ++ ++T     +S + SR R+C   R  E
Sbjct: 205 KESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNRE 244


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 326 KKLQAYCTFS*TIYSKTFRSYKSSWKGSRNRTCGX*RYPE 445
           K+ + Y T S ++ ++T     +S + SR R+C   R  E
Sbjct: 194 KESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNRE 233


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 517 LLVWTLSRPXSVPVYPXD 464
           L V TL RP  V  YP +
Sbjct: 355 LFVLTLQRPQDVDKYPAE 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,832
Number of Sequences: 438
Number of extensions: 2661
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)