Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0587
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm...    31   0.35 
At3g60700.1 68416.m06791 expressed protein                             29   1.4  
At4g00315.1 68417.m00040 F-box family protein contains F-box dom...    29   2.5  
At3g50730.1 68416.m05550 protein kinase, putative similar to pro...    29   2.5  
At1g70120.1 68414.m08069 hypothetical protein                          29   2.5  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    28   3.3  
At5g19930.1 68418.m02371 integral membrane family protein contai...    28   4.3  
At4g28025.1 68417.m04020 expressed protein                             28   4.3  
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    27   5.7  
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ...    27   5.7  
At1g70020.1 68414.m08058 hypothetical protein                          27   7.6  

>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein low
           similarity to SP|P36929 SUN protein (FMU protein)
           {Escherichia coli}; contains Pfam profiles PF01189:
           NOL1/NOP2/sun family, PF01029: NusB family
          Length = 523

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 451 YLLRIPLXTTRPVSGSLPARFVTSKGF 371
           +LLR P  T  PV+  +P+ FVTS+GF
Sbjct: 475 FLLRHPEFTIDPVTSFVPSSFVTSQGF 501


>At3g60700.1 68416.m06791 expressed protein
          Length = 219

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 124 WKSMVNLPNNLPSTVLCLSFKIKYIMALNRLFSNLTIATA 243
           W   + +P NLP + +CL    +     + L+ N+TIAT+
Sbjct: 86  WNLSIRVPENLPGSYICLQGDFQ----ASLLYKNITIATS 121


>At4g00315.1 68417.m00040 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 441

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -1

Query: 302 YIGFTRRMNNTNVK---ISLATIAVAMVKLEKSLFKAIIYLILKLK 174
           Y+  +  ++++NV+   + L T A    KL KSL+K    +ILKLK
Sbjct: 96  YLWVSLAVHDSNVRELSLKLCTFAERPTKLPKSLYKCKSIVILKLK 141


>At3g50730.1 68416.m05550 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 370

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 323 ETRFRLFYIGFTRRMNNTNVKISLATIAVAMVKLEKSLFKAIIYLILKLKHKTV 162
           E  + + Y G  R      VKI   +   A+ K  K  F+  + L+ K+KH  +
Sbjct: 44  EGAYSIVYKGLLRNQFPVAVKIMDPSTTSAVTKAHKKTFQKEVLLLSKMKHDNI 97


>At1g70120.1 68414.m08069 hypothetical protein
          Length = 193

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 121 NWKSMVNLPNNLPSTVLCLSFKIK 192
           NW  ++ +P+NLP+  +CL   I+
Sbjct: 65  NWDLLIRVPSNLPNAYICLQGDIQ 88


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
 Frame = +2

Query: 293 TQYRKAETWFRKKLQ-AYCTFS*TIYSKTFRSYKSSWKGSRNR----TCGX*RYPEEV*X 457
           T +RK   WF    + A    S T Y   F  Y   W    +     T     +P +   
Sbjct: 287 TNWRKGSQWFEIDREVALAVVSDTTYFPVFEKY-CLWNCYADEHYLSTFVHAMFPGKNAN 345

Query: 458 TNITWIDWYRXGP 496
            ++TW DW R GP
Sbjct: 346 RSLTWTDWSRRGP 358


>At5g19930.1 68418.m02371 integral membrane family protein contains
           Pfam domain PF01940: Integral membrane protein
          Length = 288

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 466 DICVLYLLRIPLXTTRPVSGSLPARFVTSKGFTVYCSGKCTIRL*LFPKPG 314
           D+ +  LL IPL     + GSL    +   G T+  SG C++R  +  KPG
Sbjct: 204 DVALKQLLVIPLSALAGLCGSLIDSIL---GATIQFSGFCSVRNKVVGKPG 251


>At4g28025.1 68417.m04020 expressed protein
          Length = 157

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +3

Query: 267 VGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVXKGIRR 446
           VGVV   + PN+  P P  GK+  +     E   V PLE   LA +  E  +   K  RR
Sbjct: 55  VGVVRVLANPNVSPPPPP-GKAKVK----KEVIMVDPLEAKRLASKQMEEIKGREKQQRR 109

Query: 447 R 449
           R
Sbjct: 110 R 110


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 506 DPQ*AXLCTSLSX*YLCXIPPPDTFXDHTSCFWIP 402
           DPQ   LC       +  I PP  F  H SCF +P
Sbjct: 42  DPQTCSLCAFKHSNLVFYICPPCDFIVHQSCFSLP 76


>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 922

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 506 DPQ*AXLCTSLSX*YLCXIPPPDTFXDHTSCFWIP 402
           DPQ   LC       +  I PP  F  H SCF +P
Sbjct: 476 DPQTCSLCALKHSNLVFYICPPCDFIIHQSCFSLP 510


>At1g70020.1 68414.m08058 hypothetical protein
          Length = 225

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 118 VNWKSMVNLPNNLPSTVLCLSFKIKYIMALNRLFSNLTIATAMVAS 255
           V W  ++ LP++LP   +CL   ++  +    L+  +TIA + + S
Sbjct: 92  VKWDLVIRLPSDLPGYYMCLKGDLQTFI----LYKGVTIANSSLDS 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,689,322
Number of Sequences: 28952
Number of extensions: 205202
Number of successful extensions: 462
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)