Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0585
         (403 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    35   0.69 
UniRef50_Q5DH93 Cluster: Putative uncharacterized protein; n=1; ...    32   3.7  
UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;...    32   4.9  
UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacter...    32   4.9  
UniRef50_A6G9V6 Cluster: Queuine tRNA-ribosyltransferase; n=1; P...    31   8.5  
UniRef50_Q4Q7K1 Cluster: Putative uncharacterized protein; n=3; ...    31   8.5  
UniRef50_Q9CMX0 Cluster: Uncharacterized protein PM0682; n=1; Pa...    31   8.5  

>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 34.7 bits (76), Expect = 0.69
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 33  MKNAVNCAS*CELQDTFEHRHFERTLR 113
           MKN   C + CELQ+   HR FER LR
Sbjct: 1   MKNVAKCDTWCELQNPVNHRVFERKLR 27


>UniRef50_Q5DH93 Cluster: Putative uncharacterized protein; n=1;
          Schistosoma japonicum|Rep: Putative uncharacterized
          protein - Schistosoma japonicum (Blood fluke)
          Length = 106

 Score = 32.3 bits (70), Expect = 3.7
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 74 LQFTL*RAVNCVLHRPASXVIHR 6
          +QFTL   V C LHR  S VIHR
Sbjct: 1  MQFTLIHTVGCTLHRHTSRVIHR 23


>UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 243

 Score = 31.9 bits (69), Expect = 4.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 160 CSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 26
           C  P   +GPG  S    V +K  C+N SC+++Y+ + T F   P
Sbjct: 83  CEAPLVCNGPGKYSV---VPTKTDCNNDSCNNYYECEATWFLFVP 124


>UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacterium
           MLMS-1|Rep: Sensor protein - delta proteobacterium
           MLMS-1
          Length = 537

 Score = 31.9 bits (69), Expect = 4.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 81  FEHRHFERTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 215
           F+HR  + ++R VE   GP+L EGR       H V+  A V R +
Sbjct: 212 FQHRRADGSIREVEVFAGPILLEGRSLLYSIVHDVSERARVEREL 256


>UniRef50_A6G9V6 Cluster: Queuine tRNA-ribosyltransferase; n=1;
           Plesiocystis pacifica SIR-1|Rep: Queuine
           tRNA-ribosyltransferase - Plesiocystis pacifica SIR-1
          Length = 416

 Score = 31.1 bits (67), Expect = 8.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 210 DGSRARHEPRNVINVFYAAGPQTGVVLDVSP 118
           DGS+AR  PR+V+    A GP   ++LD  P
Sbjct: 154 DGSKARMTPRSVLEAEAAIGPDICMILDHCP 184


>UniRef50_Q4Q7K1 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 538

 Score = 31.1 bits (67), Expect = 8.5
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 98  RTHIAVRGDTSRTTPV*GPAA*KTLITLR 184
           RTH+AVR D S+TT V  PAA  T   L+
Sbjct: 366 RTHLAVREDCSKTTAVAAPAAVATRKVLK 394


>UniRef50_Q9CMX0 Cluster: Uncharacterized protein PM0682; n=1;
           Pasteurella multocida|Rep: Uncharacterized protein
           PM0682 - Pasteurella multocida
          Length = 102

 Score = 31.1 bits (67), Expect = 8.5
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 331 LKMFYCYFKIFIITSNL 381
           L++FY YFKIFII SNL
Sbjct: 79  LRLFYFYFKIFIIFSNL 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 373,791,139
Number of Sequences: 1657284
Number of extensions: 6391320
Number of successful extensions: 13809
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13809
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17349842203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)