Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0585
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   4.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           20   7.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   7.9  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 245 RVRTRNAERVNATDHER 195
           + RT++  RV  TDH+R
Sbjct: 152 KTRTKDKYRVVYTDHQR 168


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 195 RHEPRNVINVFYAAGPQTG 139
           +H P +V   F   GP TG
Sbjct: 110 QHIPASVAAAFAPQGPSTG 128


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 79  HLNIDISNAHCGP 117
           H N    NAH GP
Sbjct: 44  HFNSPAGNAHTGP 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,360
Number of Sequences: 336
Number of extensions: 1558
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)