Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0585
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0510 + 24420402-24422582                                         31   0.34 
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    30   0.60 
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969...    28   2.4  
04_04_0036 - 22307328-22308026                                         27   5.6  
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290...    27   5.6  
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558...    27   7.3  
06_03_0745 + 24109406-24109921                                         26   9.7  

>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 175 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQ 50
           D CF  + P+D+   GC S   +  SKC RC   S S + DA+
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAE 544


>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 46  LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-IKNINHIAWLVPRS*SVALT 219
           L+A+ S +NC + +  +IS  H G   H    + + AGC ++ + H+    P+    A+ 
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK--DKAVD 782

Query: 220 RSALRVRTRRYV 255
           RS  ++    YV
Sbjct: 783 RSVEKLSNAFYV 794


>01_06_0542 +
           30096277-30096340,30096444-30096529,30096810-30096934,
           30097405-30097513,30097865-30097981,30098066-30098149,
           30098795-30098914,30099416-30099502,30100160-30100237
          Length = 289

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +1

Query: 124 HIQDHSCLRAGCIKNINHIAWLVPRS*SVALTRSALR 234
           HI   S L  G + N+N IA  VPR   VA  R+ LR
Sbjct: 183 HIGSFSFLGGGSVFNLNQIAQDVPRYMMVAGDRAELR 219


>04_04_0036 - 22307328-22308026
          Length = 232

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 154 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 56
           RP  R G    + +R V+    CRC+   C  HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147


>03_05_1160 +
           30826972-30828375,30828641-30828754,30828901-30829032,
           30830087-30830224
          Length = 595

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 163 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTA 41
           +C  P + S  G ++ D  + S+C CS  S   S+H DA   A
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCA 389


>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
            5588428-5588484,5588663-5588800,5588901-5588966,
            5589234-5589452,5589522-5589737,5589813-5589884,
            5589952-5590205,5590356-5590525,5590840-5591029,
            5592211-5592331,5592838-5592921,5593003-5593365,
            5594530-5594724,5594938-5595933,5596329-5596370
          Length = 1240

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 157  SRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYD---AQLTAFFIDPRAX*STVQ 2
            S P D+    C    RNV S  +CS V C   +    A+   F++D +   ST++
Sbjct: 976  SLPKDKDT--CAICHRNVGSCLKCSTVDCQITFHPTCARDAGFYMDTKTIGSTLE 1028


>06_03_0745 + 24109406-24109921
          Length = 171

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = -1

Query: 151 PSDRSGPGCVSTDRN----VRSKCRCSNVSCSSH 62
           P  R GP   ST R         CRC N+ C+ H
Sbjct: 103 PKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMH 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,184,637
Number of Sequences: 37544
Number of extensions: 180056
Number of successful extensions: 441
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)