Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0585
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.15 
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.15 
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                32   0.20 
SB_59525| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   2.5  
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            27   4.3  
SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)                       27   7.6  
SB_40122| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_39253| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_16742| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_14935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_13812| Best HMM Match : DUF1004 (HMM E-Value=5.8)                   27   7.6  
SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_2597| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_55013| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_32106| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_15189| Best HMM Match : DUF1004 (HMM E-Value=5.8)                   27   7.6  
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_10242| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_8221| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 216 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHXXXXXXXXX 37
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+H         
Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 211

Query: 36  XXXREPSDPP 7
               EP DPP
Sbjct: 212 SSMHEPRDPP 221


>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 216 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHXXXXXXXXX 37
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+H         
Sbjct: 65  QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 120

Query: 36  XXXREPSDPP 7
               EP DPP
Sbjct: 121 SSMHEPRDPP 130


>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 102 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 215
           +T+R V+T P  L +  RLH  H +HC     L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 102 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 215
           +TLR V+T P  L +  R H+ H +HC       +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247



 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 102 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 215
           +T+R+V+T P  L +  R H+   +HC       +R V
Sbjct: 242 QTVRTVQTPPDRLCALYRFHQTDCAHCTDTTRQTVRTV 279



 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 102 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 215
           +T+R+V+T P  L +  RLH+   +HC       +R V
Sbjct: 306 QTVRTVQTPPDRLCALYRLHQTDCAHCTDFTRQTVRIV 343


>SB_59525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 120 PRTAMCVRNVDVQMCPAVHXXXXXXXXXXXXREPSDPP 7
           P++A+CV+  D  +  A+H             EP DPP
Sbjct: 6   PKSAICVQRFDDSLNSAIHTTYRTWLRSSSMHEPRDPP 43


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  LNIDISNAHCGPWRHIQDHSCLRAGCIKN 168
           L +D+ NA  GPW  I+ H C +  C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313


>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 115 PWRHIQDHSCLRAGCIKNI 171
           PWR+  DH CL+   I N+
Sbjct: 5   PWRNAADHHCLKTAIIFNV 23


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 102 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 215
           +T+R+V+T P  L +  R H+   +HC       +R V
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402


>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
          Length = 186

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5   DGGSLGSRVDEERS 46
           +GGSLGS +DEERS
Sbjct: 106 NGGSLGSCIDEERS 119


>SB_40122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_39253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_16742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_14935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_13812| Best HMM Match : DUF1004 (HMM E-Value=5.8)
          Length = 124

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 44 NGGSLGSCIDEERS 57


>SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 75  DTFEHRHFER-TLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRVDAFRVT 233
           D+  +  F R T  +V+T P    +  RLH+   +HC      ++R V   R T
Sbjct: 64  DSAHYTDFTRQTAHTVQTSPDRQRTLYRLHQTDSAHCTDFTKQIVRTVQTTRQT 117


>SB_2597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_55013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 50 NGGSLGSCIDEERS 63


>SB_32106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 279 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV 401
           P + + N      L DG  ++   +    N VEPLW   +V
Sbjct: 17  PNSPVQNGTLKQSLEDGKDHMSTCYDWSRNEVEPLWLYEHV 57


>SB_15189| Best HMM Match : DUF1004 (HMM E-Value=5.8)
          Length = 97

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5   DGGSLGSRVDEERS 46
           +GGSLGS +DEERS
Sbjct: 714 NGGSLGSCIDEERS 727


>SB_10242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


>SB_8221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  DGGSLGSRVDEERS 46
          +GGSLGS +DEERS
Sbjct: 17 NGGSLGSCIDEERS 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,993,457
Number of Sequences: 59808
Number of extensions: 217311
Number of successful extensions: 590
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)