Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0585
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   2.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   2.3  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   9.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 352 NNNKTFLDPSERRASETRFVIVVFGQILI 266
           N+N T L P + R +E   V +VF  +L+
Sbjct: 20  NSNYTELLPIDMRFNEGHIVSIVFYSVLM 48


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 348 LFQNFHNHVEPLWR 389
           LF N HNH++ +++
Sbjct: 51  LFDNVHNHIQNIFK 64


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 348 LFQNFHNHVEPLWR 389
           LF N HNH++ +++
Sbjct: 34  LFDNVHNHIQNIFK 47


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 118 TDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 26
           TDR +R+K     V C     A + + + DP
Sbjct: 74  TDRVIRAKLGKVGVHCMKTTQAVVVSLYEDP 104


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 20  GSRVDEERS*LRV 58
           GSR DEER  LR+
Sbjct: 295 GSRFDEERLTLRI 307


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = -1

Query: 154 RPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDPR 23
           RP     P  V  D  VRS    S V  +   D      ++D R
Sbjct: 22  RPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDRR 65


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 160 CSRPSDRSGPGCVS 119
           C RPSD + P   S
Sbjct: 268 CDRPSDEAEPSSTS 281


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 163 LCSRPSDRSGPGCVS 119
           LC  P  R GP  VS
Sbjct: 120 LCEVPESRDGPPSVS 134


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 396 NARAREVRRDYENFEITIKHF 334
           N+RA     DY     T+K+F
Sbjct: 132 NSRANTYNFDYPQVPYTVKNF 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,230
Number of Sequences: 438
Number of extensions: 1689
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)