Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0585
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43245.1 68414.m04985 expressed protein                             30   0.66 
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   2.0  
At1g23140.1 68414.m02892 C2 domain-containing protein similar to...    28   2.7  
At2g02660.1 68415.m00205 hypothetical protein                          27   3.5  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    27   6.2  
At3g11540.2 68416.m01408 gibberellin signal transduction protein...    26   8.2  
At3g11540.1 68416.m01407 gibberellin signal transduction protein...    26   8.2  
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    26   8.2  
At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /...    26   8.2  

>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 4   GRWITXLAGR*RTQLTARHSVNCRTHLNIDISNAHCGPWRHIQDHSCLRAGCIKNINHIA 183
           G  +  LA +   +L+    V C   L ++ SN+H    R I++ S     C+++I+ + 
Sbjct: 432 GELLFDLAPKLLMELSVESDVKCTKCLMLETSNSH----RDIKEKSRQILSCVRDISQVT 487

Query: 184 W 186
           W
Sbjct: 488 W 488


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 169 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFI 32
           C  C RPS+    G      NV+   RC+ +S   ++D+ L + FI
Sbjct: 350 CVACQRPSN----GFRYESGNVKLDVRCATISDEFNHDSHLHSLFI 391


>At1g23140.1 68414.m02892 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 165

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 163 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 26
           L SR S+ S P  V T  + + K R    SC+  +D +LT    DP
Sbjct: 18  LVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGINDP 63


>At2g02660.1 68415.m00205 hypothetical protein
          Length = 421

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 234 RSYSSLRLFYLIKI*PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEPL 383
           R Y+S + FY+    P++    RV      +  K      + F NHVE L
Sbjct: 334 RKYTSKQPFYVFYFNPESNTLQRVETQGFGEAFKAETCSVRTFVNHVENL 383


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 169 CFLCSRPSDRSGPGCVSTDRNVRSKC 92
           C +C++P   S  GC+  D N  ++C
Sbjct: 598 CRVCAKPCGVSFYGCIGCDFNAHAEC 623


>At3g11540.2 68416.m01408 gibberellin signal transduction protein
           (SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
           [Arabidopsis thaliana]; contains Pfam profile PF00515
           TPR Domain
          Length = 732

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 169 CFLCSRPSDRSGPGC 125
           CFLC  PS  +GP C
Sbjct: 449 CFLCYTPSPEAGPVC 463


>At3g11540.1 68416.m01407 gibberellin signal transduction protein
           (SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
           [Arabidopsis thaliana]; contains Pfam profile PF00515
           TPR Domain
          Length = 914

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 169 CFLCSRPSDRSGPGC 125
           CFLC  PS  +GP C
Sbjct: 631 CFLCYTPSPEAGPVC 645


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 153 GPQTGVVLDVSPRTAMCVRNVDVQMCP 73
           GPQ+G    VS  + M +RNV V + P
Sbjct: 317 GPQSGFFFSVSNGSEMLLRNVPVLVIP 343


>At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 664

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 85  NIDISNAHCGPWRHIQDHSCLRAGCIKNINHIAWLVPRS*SVALTRSALRVRT 243
           N+DIS+  CGP   I   S    G  K   ++  L  R+  +  T   LR++T
Sbjct: 235 NLDISDVRCGPGHGISVGS---LGRYKEEKNVQGLTVRNSIINGTTDGLRIKT 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,986,921
Number of Sequences: 28952
Number of extensions: 138441
Number of successful extensions: 327
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)