Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0582
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 87 2e-18
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 53 3e-08
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 39 6e-04
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 27 2.5
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 2.5
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 25 5.7
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 5.7
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 5.7
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 25 7.5
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 25 7.5
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 87.0 bits (206), Expect = 2e-18
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCK L PEY AA L+ D ++L +VDCTE G C ++S+ GY TL +F+ +
Sbjct: 49 PWCGHCKALAPEYESAADELEKD--GISLVEVDCTEEG-DLCSEYSIRGYPTLNVFKNGK 105
Query: 437 LXSEYNGPRESNGIVKYM 490
S+Y+GPR+ + +VKYM
Sbjct: 106 QISQYSGPRKHDALVKYM 123
Score = 45.2 bits (102), Expect = 7e-06
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCK L P Y A D V +AK+D TE S S+ G+ T+ F+ +
Sbjct: 383 PWCGHCKNLAPTYEKLAEEYSDD-SNVVVAKIDATENDISV----SISGFPTIMFFKAND 437
Query: 437 LXS--EYNGPR 463
+ Y G R
Sbjct: 438 KVNPVRYEGDR 448
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 52.8 bits (121), Expect = 3e-08
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDC-TEGGKSTCEQFSVXGYSTLKIF--- 424
PWCG+CK+L P Y A L + +P A VDC + ++ C Q+ V G+ T+K+
Sbjct: 58 PWCGYCKKLVPTYQKLASNLHSLLPVTA---VDCDADQNRAVCSQYQVQGFPTIKLVYPS 114
Query: 425 -RXXELXS-EYNGPRESNGIVKYM 490
+ L S +YNG R + K++
Sbjct: 115 SKGSSLSSTDYNGDRSYKSLQKFV 138
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 WCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXEL 439
WCG+CKRL P Y + K + P V + K++ + V + T+K F +
Sbjct: 169 WCGYCKRLAPTYETLGKVFKNE-PNVEIVKIN-ADVFADIGRLHEVASFPTIKFFPKDDK 226
Query: 440 XSE--YNGPRESNGIVKYMPCPSWT 508
Y G R +++Y+ S T
Sbjct: 227 DKPELYEGDRSLESLIEYINKKSGT 251
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 WCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIF-RXXE 436
WCGHCK L P Y G L D V + K+D + +++ + G+ TL F
Sbjct: 50 WCGHCKSLAPVYE-ELGALFEDHNDVLIGKID-ADTHSDVADKYHITGFPTLIWFPPDGS 107
Query: 437 LXSEYNGPRESNGIVKYM 490
+Y+ R+ + + +++
Sbjct: 108 EPVQYSNARDVDSLTQFV 125
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 260 WCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTE 364
WCG CK + P ++ A K P AKV+ E
Sbjct: 30 WCGPCKAISPLFSQLAS--KYASPKFVFAKVNVDE 62
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 184 FSILQIPTFRLFYLNMIQPWSCF 252
F LQ+ FR + N+++PW CF
Sbjct: 208 FYCLQLQMFRKMH-NIVRPWDCF 229
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 25.4 bits (53), Expect = 5.7
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDV--PPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRX 430
P CG CKRL P + K V +VDC++ S+C ++ TL +++
Sbjct: 52 PSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSK-ELSSCA--NIRAVPTLYLYQN 108
Query: 431 XELXSE 448
E+ E
Sbjct: 109 GEIVEE 114
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 242 GHVLPPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTE 364
G+ + WCGH YA L+ P+ L++ C +
Sbjct: 228 GYNMYEWCGHSDFYTSGYAARTQELENFTIPIFLSEFGCNK 268
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 487 VLDNAIRLPWSIVLGXKLSXSEYFQCRISGHRELFTSTLATFRTVY 350
+L+ L W +L + S+Y + S +E F+ T A F +Y
Sbjct: 353 ILNRLNFLDWHRILNILMYCSQYLPLKASTSKEAFSKT-AAFANIY 397
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 150 IIYLCKAAEEDVLDLTDSDFSAVLSQHD 233
+IY C+AA+E++LD LS+ D
Sbjct: 6 LIYACRAADEELLDEIIEKCPQELSRRD 33
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 260 WCGHCKRLKP 289
WCG CK LKP
Sbjct: 46 WCGPCKYLKP 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,001
Number of Sequences: 5004
Number of extensions: 39766
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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