Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0582
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 122 2e-28
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 4e-18
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 76 2e-14
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 71 6e-13
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 61 5e-10
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 9e-10
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 55 3e-08
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 55 5e-08
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 54 8e-08
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 53 1e-07
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19) 32 0.28
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 30 1.1
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058) 30 1.5
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 28 4.5
SB_35412| Best HMM Match : Sushi (HMM E-Value=2.4) 28 5.9
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 27 7.9
SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1) 27 7.9
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 27 7.9
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 122 bits (295), Expect = 2e-28
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCKRL PEY AA LK + PPV LAKVDCTE GK TC ++ V GY TLKIFR E
Sbjct: 565 PWCGHCKRLAPEYETAAEALKKNDPPVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGE 624
Query: 437 LXSEYNGPRESNGIVKYMPCPSWTSFXELLTVXDSE 544
+ +Y+GPR+S+GI++YM + S E+ +V E
Sbjct: 625 MSKDYDGPRDSSGIIRYMKKQAGPSSVEIKSVDHLE 660
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKI 421
PWCGHCK L+P+Y L+ DV + +AK+D T FSV G + I
Sbjct: 890 PWCGHCKSLEPKYNELGEKLQ-DVKDIVIAKMDAT--ANDAPPNFSVQGIIIISI 941
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 350 VDCTEGGKSTCE-QFSVXGYSTLKIFRXXELXSEYNGPRESNGIVKYM 490
+DC G++TC +F + + TLK+FR + +Y GP+++ + Y+
Sbjct: 434 MDCFGAGRATCYYRFGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYI 481
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 88.2 bits (209), Expect = 4e-18
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCK L PEYA AA +K + PPV AK+D T ++F V GY TLKIFR
Sbjct: 88 PWCGHCKSLAPEYAKAAKKMKLNDPPVPFAKMDATV-ASDIAQRFDVSGYPTLKIFRKG- 145
Query: 437 LXSEYNGPRESNGIVKYM 490
EY GPRE +GIV+YM
Sbjct: 146 TPYEYEGPREESGIVEYM 163
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/78 (47%), Positives = 48/78 (61%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCK+L PEY AA L+ PP+ LA VD T + +++ V GY TLK+FR +
Sbjct: 203 PWCGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATIESE-LAQKYEVQGYPTLKVFRKGK 261
Query: 437 LXSEYNGPRESNGIVKYM 490
+EY G R+ GI YM
Sbjct: 262 -ATEYKGQRDQYGIASYM 278
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 75.8 bits (178), Expect = 2e-14
Identities = 39/78 (50%), Positives = 49/78 (62%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCK L PEYA AAG LK++ + LAKVD T K E+F V GY T+K F+ +
Sbjct: 51 PWCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAETK-LGEKFQVQGYPTIKFFKDGK 109
Query: 437 LXSEYNGPRESNGIVKYM 490
SEY G R + IV ++
Sbjct: 110 -PSEYAGGRTAPEIVSWL 126
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCK+L P + K D + +AK+D T + E V + T+K F
Sbjct: 412 PWCGHCKQLAPIWDQLGEKYK-DHADIVVAKMDST---ANEVEGVKVHSFPTIKYFPKEG 467
Query: 437 LXSEYNGPRESNGIVKYM 490
+YNG R + VK++
Sbjct: 468 EAVDYNGGRTLDDFVKFL 485
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 135 VLLLGIIYLCKAAE----EDVLDLTDSDFSAVLSQHDTALVMFY 254
VLLL ++ L + E EDVL LT+ +F ++ + LV FY
Sbjct: 6 VLLLALVSLAYSEEIKEEEDVLVLTEKNFDEAVAANKHVLVEFY 49
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 70.9 bits (166), Expect = 6e-13
Identities = 33/81 (40%), Positives = 46/81 (56%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHCK KP+Y AA K D P AK+DCT+ G C++ V GY TL+ + +
Sbjct: 174 PWCGHCKNAKPKYEKAAETFK-DQPNRVFAKLDCTKFG-DVCDKEEVNGYPTLRYYLYGK 231
Query: 437 LXSEYNGPRESNGIVKYMPCP 499
EY+G R + ++ +M P
Sbjct: 232 FVVEYDGDRVTEDLISFMEEP 252
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCGHC +KP Y AA +L + LA VDCT+ K ++ ++ GY T+K+++
Sbjct: 77 PWCGHCNEMKPNYYKAAQVLHDEDANCNLAAVDCTK-HKDVAKKVALAGYPTVKLYKASN 135
Query: 437 LXSEYNGPRESNGIVKYM 490
++ E + +VK +
Sbjct: 136 -TAKAASAEEDSSLVKQL 152
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/44 (50%), Positives = 26/44 (59%)
Frame = +2
Query: 281 LKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYST 412
+KP + AA L DV ALA VDCTE K+TC Q + GY T
Sbjct: 1 MKPVFEKAAKQLGKDVKG-ALAAVDCTES-KNTCNQRDIKGYPT 42
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 61.3 bits (142), Expect = 5e-10
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIF-RXX 433
PWCGHCK+L P Y G T V +AKVD +G + +F V G+ T+K F +
Sbjct: 49 PWCGHCKQLAPTYE-QLGEAYTQSSDVIIAKVD-ADGDRDLGSRFDVKGFPTIKYFPKGS 106
Query: 434 ELXSEYNGPRESNGIVKYM 490
EYNG R+ N +K++
Sbjct: 107 TTPEEYNGGRDINDFIKFI 125
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 60.5 bits (140), Expect = 9e-10
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEG-GKSTCEQFSVXGYSTLKIFRXX 433
PWC HC+ L P+ AA L AKVDCT+ K C+ F + GY ++K+F+
Sbjct: 47 PWCHHCQELLPQLEGAANALAAK-GLFQFAKVDCTDPRSKVLCDNFKIEGYPSVKLFKFG 105
Query: 434 ELXSEYNGPRESNGIVKYM 490
+ +Y G R +V YM
Sbjct: 106 KYAGDYIGQRTDAALVNYM 124
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +2
Query: 257 PWCGHCKRLKPEYA-VAAGLLKTDVPPVALAKVDCTEGG---KSTCEQFSVXGYSTLKIF 424
PWC HCK++ P+Y VA LL V LAKVDC+ K TC++++V T+ +F
Sbjct: 161 PWCFHCKKMAPDYKDVAKELLILSHNSVRLAKVDCSANNMATKKTCKKYNVKFLPTIYLF 220
Query: 425 RXXELXSEYNGPRESNGIVK 484
+ E+ G + +K
Sbjct: 221 HDGKFVEEFEGNNRNKKSIK 240
Score = 33.9 bits (74), Expect = 0.091
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKV 352
PWC C+RL P + AA L+ + P + AKV
Sbjct: 78 PWCSDCQRLSPLFDTAALQLRDNNPSLRFAKV 109
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 54.8 bits (126), Expect = 5e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIF---- 424
PWCGHC+RL PE+A AA LK V AL D T T ++ V GY T+K+F
Sbjct: 107 PWCGHCQRLAPEWAKAATELKGKVKVGAL---DATV-HTVTASRYQVQGYPTIKVFAAGI 162
Query: 425 RXXELXSEYNGPRESNGIVKY 487
+ +Y G R ++ I++Y
Sbjct: 163 KNSHSVEDYQGGRTASDIIQY 183
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 54.0 bits (124), Expect = 8e-08
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYST 412
PWCGHCK +KPEY AA LK P LA VD T+ + ++F V GY T
Sbjct: 109 PWCGHCKAMKPEYVDAAQTLKEQEIPGVLAAVDATKEA-ALGKRFKVEGYPT 159
Score = 40.3 bits (90), Expect = 0.001
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAA-----------GLLKTDVPP---------VALAKVDCTEGGKS 376
PWCGHCK+ KPE AA L D +A A VDCT+ +
Sbjct: 222 PWCGHCKKAKPELMSAAKHHKDKNKRALSLRDFDFSNDTLCNRRRLIAYAAVDCTK-EMA 280
Query: 377 TCEQFSVXGYSTLKIFRXXELXSEYNGPRESNGIVKYMPCP 499
C+QF V GY F + +Y RE+ +++M P
Sbjct: 281 VCQQFGVEGY-----FNYGKNDFKYTSGREAKDFIQFMDDP 316
Score = 31.5 bits (68), Expect = 0.48
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 263 CGHCKRLKPEYAVAA 307
CG+CKR KPE+A AA
Sbjct: 11 CGYCKRFKPEFAAAA 25
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/31 (70%), Positives = 23/31 (74%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAK 349
PWCGHCKRL PEY AA LK + PPV LAK
Sbjct: 40 PWCGHCKRLAPEYETAAEALKKNDPPVPLAK 70
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWC C RL PEY AA PV VDCT + C Q+++ Y T ++ +
Sbjct: 312 PWCPPCMRLLPEYRKAARSFVG--KPVGFGTVDCTVHSQ-LCHQYNIRSYPTTILYNNSQ 368
Query: 437 LXSEYNGPRESNGIVKYM 490
++ G + I++++
Sbjct: 369 -PHQFIGHHNALDIIEFV 385
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIF 424
PWCG C R P+Y A +LK V AKV+C E C + ++ Y T++++
Sbjct: 461 PWCGPCMRFAPKYEQLAKMLK---GKVRAAKVNC-EQDYGLCSEANIHSYPTVRLY 512
>SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 350 VDCTEGGKSTCE-QFSVXGYSTLKIFRXXELXSEYNGPRESNGIVKYM 490
+DC G++TC +F + + TLK+FR + +Y GP+++ + Y+
Sbjct: 237 MDCFGAGRATCYYRFGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYI 284
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTL 415
PWC C L+P+Y AA L + V + T ++TC V + TL
Sbjct: 49 PWCSDCDNLRPKYEKAARDLAKEHKFVMAKALMNTNSTQTTCLPMGVHYWRTL 101
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 SLKFVLLLGIIYLCKAAEED-VLDLTDSDFSAVLSQHDTALVMFY 254
++ FV+ L +I A +E+ + +LTD DF L + LV FY
Sbjct: 3 AIAFVVALCVIAPSYARKENPIFELTDQDFDNFLKDKEVMLVDFY 47
>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
Length = 229
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 335 VALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXELXSEYNGPRESNGIVK 484
V LA+V+C + C+ ++ Y T+K+FR Y GP +++ +VK
Sbjct: 10 VRLARVNCFDW-TDVCQDNNITVYPTIKLFRKGADELIYGGPLDADHLVK 58
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWC HC +L P + A K D + ++K++ GY TL +F+
Sbjct: 116 PWCIHCIKLAPIWERLAEDFK-DNADITISKIN---------------GYPTLMLFKDGV 159
Query: 437 LXSEYNGPRESNGIVKYM 490
EY+G R+ + + +++
Sbjct: 160 QKKEYSGNRDLDSLYRFI 177
>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
Length = 664
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIFRXXE 436
PWCG +R E+ +AA LL V +A ++C G S E++++ + ++
Sbjct: 462 PWCGQSRRAVEEFNIAASLLYGKVTFIA---INCWAG--SCREKYTLDSFPKFFVYHSKF 516
Query: 437 LXSEYNGP 460
+Y P
Sbjct: 517 PGLQYPPP 524
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 242 GHVLPPWCGHCKRLKPEYAVAAGLLKTDVP 331
G LPPWC +R + E V + L + D P
Sbjct: 479 GLCLPPWCSRAERREVEKIVTSALAELDGP 508
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 133 NFSDPNILNLAGAFQQNRTNYSAFQPNLTN 44
N PNI + A Q N T+ + QPN+T+
Sbjct: 1696 NVKQPNITDAGNATQANVTSLNVTQPNITD 1725
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 133 NFSDPNILNLAGAFQQNRTNYSAFQPNLTN 44
N + NI + + A Q N TN++ QPN+T+
Sbjct: 1654 NVTHLNITDTSNATQANVTNHNVKQPNITD 1683
>SB_35412| Best HMM Match : Sushi (HMM E-Value=2.4)
Length = 99
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 287 PEYAVAAGLLKTDVPPVALAKVDCTEG 367
P A+A+ TDVP + LA V C +G
Sbjct: 17 PHIALASVTCVTDVPHITLASVTCVKG 43
>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 CGHCKRLKPEYAVAAGLLKTDVP 331
C H R + EYA+ G L TD+P
Sbjct: 349 CHHSLRTQYEYAIILGALSTDMP 371
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 239 PGHVLPPWCGHCKRLKPEYA 298
P HV P C H +KPEYA
Sbjct: 294 PVHVFPGNCNHVILIKPEYA 313
>SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)
Length = 213
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 260 WCGHCKRLKPEYA 298
WCG CK L+P++A
Sbjct: 8 WCGACKALRPKFA 20
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 PWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVXGYSTLKIF---- 424
PWCG C P A + D+ V++ ++D + +V Y ++ +F
Sbjct: 545 PWCGMCINFAPVLLAVARFFQ-DISQVSVTRIDADQNDLPW--NLTVSSYPSIILFPAGR 601
Query: 425 RXXELXSEYNGPRESNGIVKYM 490
+ + N PR + +++++
Sbjct: 602 KDSSIAFPSNTPRTATRLIEFI 623
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 260 WCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTE 364
WCG C+++KP++ A + V AK+D E
Sbjct: 41 WCGPCRQIKPKFKKMA---LEEFKDVFFAKIDVDE 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,904
Number of Sequences: 59808
Number of extensions: 304757
Number of successful extensions: 968
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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