Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0582
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 314 LKTDVPPVALAK 349
           LK+D+PPVA  K
Sbjct: 249 LKSDIPPVAYVK 260


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 344 LAPPEGHRSLTGRRLPHTLA 285
           +APP GH + +   L  TLA
Sbjct: 513 VAPPSGHHASSAPLLAATLA 532


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 329 GHRSLTGRRLPHTLALVSYNDRTK 258
           GHR   GRR  +   L  YN   K
Sbjct: 47  GHREGLGRRHRYNFQLKPYNPEHK 70


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 329 GHRSLTGRRLPHTLALVSYNDRTK 258
           GHR   GRR  +   L  YN   K
Sbjct: 48  GHREGLGRRHRYNFQLKPYNPEHK 71


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 233 YSPGHVLPP 259
           Y PGH LPP
Sbjct: 64  YLPGHKLPP 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,922
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)