Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0579
(490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 58 5e-09
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 4e-07
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 50 1e-06
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.096
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 31 0.51
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 31 0.51
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 30 0.89
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05) 29 2.1
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12) 29 2.1
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 29 2.1
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 28 3.6
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_24728| Best HMM Match : Oxidored_q4 (HMM E-Value=8.5) 28 4.7
SB_43796| Best HMM Match : SH2 (HMM E-Value=6.4) 27 6.3
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0) 27 8.3
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 27 8.3
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 57.6 bits (133), Expect = 5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N W+ AI G GT + GG +K M F D P SP +F + HPN+Y SG V +S+
Sbjct: 1153 NTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYESGDVCISI 1212
Query: 436 L 438
L
Sbjct: 1213 L 1213
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
+L WE + G GT +E G +K M+F + P P F + HPNV+ +G V +S+
Sbjct: 361 DLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPNVHKNGEVCISI 420
Query: 436 L 438
L
Sbjct: 421 L 421
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 286 GKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSLL*L-KKXXGX 462
G +GTP+ G++KL + + P P K +F P+ HPN+ SG + L L + K
Sbjct: 4 GAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWK 63
Query: 463 PAITIKQIL 489
PA+ I +L
Sbjct: 64 PALNISSVL 72
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 33.5 bits (73), Expect = 0.096
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 251 NHLDSS*ASRQNQRDGPYAKLSVLQLNVHLLSLTFSTKITRFMSRAS 111
+ L S S++N+ D P L++ LN HL ++ ++T+FM + +
Sbjct: 2870 SRLRSPSGSKRNKEDSPNVPLTLSDLNNHLNTINLQVEVTKFMHKCA 2916
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXK 369
+L W I G G+ +EGG++ L + F D P P K
Sbjct: 163 DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPPK 200
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXK 369
+L W I G G+ +EGG++ L + F D P P K
Sbjct: 123 DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPPK 160
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 259 LMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXK 369
L W I G G+ +EGG++ L + F D P P K
Sbjct: 51 LYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPK 87
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +1
Query: 280 IPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPP-----LXHPNVYPSGTVXLSLL 438
I G TP+EGG + + D P P + K +PN+Y +G V LS++
Sbjct: 17 ITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYRNGKVCLSII 74
>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
Length = 798
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 226 EAYEESRWFMNLMTWECAIPGKKGTPWEGGL 318
+ Y + +W+ ++++W+ A + T WEG L
Sbjct: 659 KGYPDKKWWSHILSWKKAYRSGQTTGWEGWL 689
>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
Length = 501
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 152 SGIASARLAEERKAWRKDHPFGFVARPMKNPDGS*I**LGNVRYLVKRGLHGKV 313
S ++ L E +K +K+ P + K DGS + L N R + R GKV
Sbjct: 426 SYVSDVMLPESKKKQKKEKPEASSSSGTKQDDGSYVFPLANKRQVTVRDFRGKV 479
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 280 IPGKKGTPWEGGLYKLRMIFKDDXPSSPXK 369
I G TP+EGG Y L ++ + P +P K
Sbjct: 693 IRGPPETPFEGGTYNLDIVIPETYPFNPPK 722
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 307 PMESPFYQVSHIPKSLNS*TIWILHRPRDKTKGMVLTP 194
P+ES FYQ SH K ++ + H+ R + G + P
Sbjct: 235 PLESTFYQCSHCSKIYDNSSSLARHKARHEMTGKSVNP 272
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 280 IPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPL---XHPNVYPSGTVXLS 432
I G GTP++ GL+ ++ + P +P + +PN+Y G V ++
Sbjct: 640 IEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCIT 693
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 286 GKKGTPWEGGLYKLRMIFKDDXP-SSPXKCKF 378
G GTP+EGG++K+R+ + P SP F
Sbjct: 56 GPVGTPYEGGVWKVRVDLPEKYPFKSPSIANF 87
>SB_24728| Best HMM Match : Oxidored_q4 (HMM E-Value=8.5)
Length = 121
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 411 WIHIGVXQWWFKFAFXRT 358
W H WWFKF F RT
Sbjct: 64 WSHKWGRGWWFKFLFIRT 81
>SB_43796| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 352
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 203 PYAKLSVLQLNVHLLSLTFSTKITRFMSRASIKGYS*CWAID 78
P LSV L +HLL++ + R SR+ ++ Y C +D
Sbjct: 10 PPTMLSVGSLVIHLLTVLMGYQSERHQSRSGLQRYRDCKKLD 51
>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
Length = 603
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 290 KRGLHGKVGCI-NYV*SSKMXIHQVLQNA 373
K+ LHGKVGCI + + S+ + IH + A
Sbjct: 350 KQNLHGKVGCILSIIGSTVLVIHAPQEEA 378
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 328 RMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXL 429
R+ F+DD +SP + PP+ PSG L
Sbjct: 469 RVTFQDDISTSPAEPAVSPPIKRLKAEPSGQFSL 502
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,557
Number of Sequences: 59808
Number of extensions: 274154
Number of successful extensions: 529
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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