Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0579
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative ... 102 1e-22
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 64 4e-11
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 64 4e-11
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 64 4e-11
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 64 5e-11
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 63 8e-11
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 57 7e-09
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 56 2e-08
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 56 2e-08
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 54 4e-08
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 54 4e-08
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 54 5e-08
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 54 5e-08
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 54 7e-08
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 54 7e-08
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 54 7e-08
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 54 7e-08
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 54 7e-08
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 54 7e-08
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 53 9e-08
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 53 9e-08
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 53 9e-08
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 52 2e-07
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 52 2e-07
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 51 4e-07
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 51 5e-07
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 50 6e-07
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 48 3e-06
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 48 4e-06
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 48 4e-06
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 48 4e-06
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 46 1e-05
At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative ... 44 4e-05
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 40 9e-04
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 38 0.003
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 35 0.026
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro... 35 0.034
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 34 0.059
At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family pro... 33 0.10
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 33 0.14
At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family pro... 32 0.18
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 32 0.24
At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative ... 32 0.24
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ... 32 0.24
At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family pro... 29 1.7
At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family pro... 29 1.7
At4g13680.1 68417.m02126 hypothetical protein contains Pfam prof... 27 5.1
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 27 5.1
>At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P50550 Ubiquitin-like protein
SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein
ligase) (Ubiquitin carrier protein)
(Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis};
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 160
Score = 102 bits (245), Expect = 1e-22
Identities = 47/79 (59%), Positives = 53/79 (67%)
Frame = +1
Query: 253 MNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLS 432
+NLM W C IPGK GT WEGG + L M F +D PS P KCKF HPNVYPSGTV LS
Sbjct: 37 VNLMVWHCTIPGKAGTDWEGGFFPLTMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLS 96
Query: 433 LL*LKKXXGXPAITIKQIL 489
+L + PAIT+KQIL
Sbjct: 97 IL-NEDYGWRPAITVKQIL 114
Score = 54.4 bits (125), Expect = 4e-08
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +2
Query: 152 SGIASARLAEERKAWRKDHPFGFVARPMKNPDGS 253
SGIA RLAEERK+WRK+HP GFVA+P DG+
Sbjct: 3 SGIARGRLAEERKSWRKNHPHGFVAKPETGQDGT 36
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 64.5 bits (150), Expect = 4e-11
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+M W I G TPW+GG +KL + F +D P+ P +F + HPN+Y G++ L +
Sbjct: 32 NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDI 91
Query: 436 L 438
L
Sbjct: 92 L 92
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 64.5 bits (150), Expect = 4e-11
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+M W I G TPW+GG +KL + F +D P+ P +F + HPN+Y G++ L +
Sbjct: 32 NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDI 91
Query: 436 L 438
L
Sbjct: 92 L 92
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 64.5 bits (150), Expect = 4e-11
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+M W I G TPW+GG +KL + F +D P+ P +F + HPN+Y G++ L +
Sbjct: 32 NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDI 91
Query: 436 L 438
L
Sbjct: 92 L 92
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 64.1 bits (149), Expect = 5e-11
Identities = 27/78 (34%), Positives = 45/78 (57%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ W I G GTP+EGG++ L + F D P P K F+ P+ HPN+ G++ +++
Sbjct: 35 NIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNI 94
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+ ++++L
Sbjct: 95 L---KDKWTPALMVEKVL 109
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 63.3 bits (147), Expect = 8e-11
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+M W I G + TPW+GG +KL + F +D P+ P +F + HPN+Y G++ L +
Sbjct: 32 NIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDI 91
Query: 436 L 438
L
Sbjct: 92 L 92
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 56.8 bits (131), Expect = 7e-09
Identities = 29/78 (37%), Positives = 44/78 (56%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
NL W I G GTP+EGG++ L +IF D P P K F+ + H NV +G + +++
Sbjct: 64 NLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNI 123
Query: 436 L*LKKXXGXPAITIKQIL 489
L + PA+TI ++L
Sbjct: 124 L---RDSWSPALTITKVL 138
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/92 (34%), Positives = 42/92 (45%)
Frame = +1
Query: 163 KCTFS*RTESLA*GPSLWFCREAYEESRWFMNLMTWECAIPGKKGTPWEGGLYKLRMIFK 342
K FS R S A S W +S N+ W I G T +EGG + M F
Sbjct: 37 KLAFSFRNNSKA---SPWNLSPYQNQSCDCYNIFEWSVTIIGPPDTLYEGGFFNAIMTFP 93
Query: 343 DDXPSSPXKCKFEPPLXHPNVYPSGTVXLSLL 438
+ P+SP +F + HPNVY G V +S+L
Sbjct: 94 QNYPNSPPTVRFTSDMWHPNVYSDGRVCISIL 125
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ W I G T +EGG + M F + P+SP +F + HPNVYP G V +S+
Sbjct: 33 NIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISI 92
Query: 436 L 438
L
Sbjct: 93 L 93
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPNV +G++ L +
Sbjct: 29 DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KEQWSPALTISKVL 103
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 54.4 bits (125), Expect = 4e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 59 DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 118
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 119 L---KEQWSPALTISKVL 133
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 54.4 bits (125), Expect = 4e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KEQWSPALTISKVL 103
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 54.0 bits (124), Expect = 5e-08
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F+ + HPN+ +G++ L +
Sbjct: 29 DMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KEQWSPALTISKVL 103
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/61 (40%), Positives = 33/61 (54%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ W+ I G K T +EG Y+L + F +D P P K KFE HPNV G + L +
Sbjct: 63 NIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDI 122
Query: 436 L 438
L
Sbjct: 123 L 123
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KEQWSPALTISKVL 103
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KEQWSPALTISKVL 103
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 30 DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 89
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 90 L---KEQWSPALTISKVL 104
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KEQWSPALTISKVL 103
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KEQWSPALTISKVL 103
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G + L +
Sbjct: 29 DMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+TI ++L
Sbjct: 89 L---KDQWSPALTISKVL 103
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 53.2 bits (122), Expect = 9e-08
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+T+ ++L
Sbjct: 89 L---KEQWSPALTVSKVL 103
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 53.2 bits (122), Expect = 9e-08
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+T+ ++L
Sbjct: 89 L---KEQWSPALTVSKVL 103
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 53.2 bits (122), Expect = 9e-08
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNV-YPSGTVXLS 432
NL IPG GTP+EGG +++ + D P P K +F + HPN+ SG + L
Sbjct: 31 NLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLD 90
Query: 433 LL*LKKXXGXPAITIKQIL 489
+L K PA+T+K L
Sbjct: 91 IL---KDQWSPALTLKTAL 106
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F + HPN+ +G++ L +
Sbjct: 29 DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 88
Query: 436 L*LKKXXGXPAITIKQI 486
L K PA+TI ++
Sbjct: 89 L---KEQWSPALTISKV 102
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ W +I G T +EGG + M F ++ P SP F + HPNVY G V +S+
Sbjct: 34 NVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISI 93
Query: 436 L 438
L
Sbjct: 94 L 94
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 51.2 bits (117), Expect = 4e-07
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
++ W+ I G +P+ GG++ + + F D P P K F+ + HPN+ G++ L +
Sbjct: 30 DIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDI 89
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA T ++L
Sbjct: 90 L---KEQWSPAPTTSKVL 104
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 50.8 bits (116), Expect = 5e-07
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ W+ I G K T +EG Y+L + F +D P K KFE HPNV G + L +
Sbjct: 64 NIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDI 123
Query: 436 L 438
L
Sbjct: 124 L 124
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 50.4 bits (115), Expect = 6e-07
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 274 CA-IPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSLL*LKK 450
CA I G GTP+E GL+++++ D P SP K F + HPNV +G + ++ L K
Sbjct: 43 CADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTL---K 99
Query: 451 XXGXPAITIKQIL 489
P++ ++ +L
Sbjct: 100 KDWNPSLGLRHVL 112
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNV-YPSGTVXLS 432
N+ W I G TP+EGG+++L + P P + +F + HPNV + +G + L
Sbjct: 33 NIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
Query: 433 LL*LKKXXGXPAITIKQI 486
+L K PA T++ +
Sbjct: 93 IL---KNAWSPAWTLQSV 107
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ + I G +P+EGG++KL + ++ P + K +F + HPN+ G + L +
Sbjct: 33 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDI 92
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+ I+ +L
Sbjct: 93 L---KDKWSPALQIRTVL 107
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ + I G +P+EGG++KL + ++ P + K +F + HPN+ G + L +
Sbjct: 33 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDI 92
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+ I+ +L
Sbjct: 93 L---KDKWSPALQIRTVL 107
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ + I G +P+EGG++KL + ++ P + K +F + HPN+ G + L +
Sbjct: 33 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDI 92
Query: 436 L*LKKXXGXPAITIKQIL 489
L K PA+ I+ +L
Sbjct: 93 L---KDKWSPALQIRTVL 107
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +1
Query: 280 IPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSLL*LKKXXG 459
I G +P+EGG++KL + ++ P + K +F + HPN+ G + L +L K
Sbjct: 8 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL---KDKW 64
Query: 460 XPAITIKQIL 489
PA+ I+ +L
Sbjct: 65 SPALQIRTVL 74
>At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme from [Oryza
sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134,
SP|P35131; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 177
Score = 44.4 bits (100), Expect = 4e-05
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTVXLSL 435
N+ WE + G G P+E G++ + + P P K F+ + HPN+ G + + +
Sbjct: 58 NIFRWEATVNGPVGCPYEKGVFTVSVHIPPKYPYEPPKITFKTKIFHPNISEIGEIFVDI 117
Query: 436 L 438
L
Sbjct: 118 L 118
>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
similar to ubiquitin-conjugating enzyme (GI:3319990)
[Mus musculus]; similar to Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
sapiens];
Length = 609
Score = 39.9 bits (89), Expect = 9e-04
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 205 PSLWFCREAYEESRWFMNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEP 384
P + F R AYE SR M+L+ I G +GTP+ GL+ + F D PS+P +
Sbjct: 349 PEMIFVR-AYE-SR--MDLL--RAVIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHS 402
Query: 385 P--LXHPNVYPSGTVXLSLL 438
+PN+Y G V LSLL
Sbjct: 403 GGLRINPNLYNCGKVCLSLL 422
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 280 IPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPP--LXHPNVYPSGTVXLSLL 438
I G +GTP+ GL+ + F D PS P K + +PN+Y G V LSL+
Sbjct: 641 IIGAEGTPYHDGLFFFDIQFPDTYPSVPPKVHYHSGGLRINPNLYKCGKVCLSLI 695
Score = 36.7 bits (81), Expect = 0.008
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 280 IPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPP--LXHPNVYPSGTVXLSLL 438
I G +GTP+ GL+ + F D PS P + +PN+Y G V LSLL
Sbjct: 307 IIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYNCGKVCLSLL 361
Score = 32.7 bits (71), Expect = 0.14
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 280 IPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPP--LXHPNVYPSGTVXLSL 435
I G +GTP+ GL+ + F D PS P + +PN+Y G V +S+
Sbjct: 953 IIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVYYHSGGLRINPNLYNCGKVLVSI 1006
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family protein
low similarity to ubiquitin-conjugating BIR-domain enzyme
APOLLON [Homo sapiens] GI:8489831, ubiquitin-conjugating
enzyme [Mus musculus] GI:3319990; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1102
Score = 35.1 bits (77), Expect = 0.026
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 229 AYEESRWFMNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPP--LXHPN 402
AYE+ M+L+ I G GTP++ GL+ D PS P + +PN
Sbjct: 874 AYEDR---MDLL--RAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGGWRLNPN 928
Query: 403 VYPSGTVXLSLL 438
+Y G V LSLL
Sbjct: 929 LYEEGKVCLSLL 940
>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 907
Score = 34.7 bits (76), Expect = 0.034
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 277 AIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPP--LXHPNVYPSGTVXLSLL 438
A+ G GTP+ GL+ ++ P P + +PN+Y SG V LSLL
Sbjct: 697 ALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVCLSLL 752
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 33.9 bits (74), Expect = 0.059
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 286 GKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNV-YPSGTVXLSLL 438
G K + +EGG++K+R+ D P F + HPNV SG+V L ++
Sbjct: 38 GPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVI 89
>At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 159
Score = 33.1 bits (72), Expect = 0.10
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 259 LMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYPSGTV 423
+ +W I G T +EG +++L++ D P SP +F+ + V P V
Sbjct: 44 MQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGV 98
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 286 GKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYP-SGTVXLSLL 438
G K + ++GG++K+R+ D P F + HPNV SG+V L ++
Sbjct: 38 GPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVI 89
>At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 158
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 LMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNVYP-SGTVXLSL 435
+ +W I G T +EG +++L++ + P SP +F+ + V P +G V SL
Sbjct: 44 MQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSL 103
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 31.9 bits (69), Expect = 0.24
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSP 363
+++ W + G +GTP+ GG Y ++ F + P P
Sbjct: 33 DILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKP 68
>At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative
similar to Non-Canonical UBiquitin Conjugating Enzyme 1
(NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus]
GI:7363050, [Homo sapiens] GI:7362973; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 309
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSP 363
N+ W+ AI G T +EGG+Y R+ D P P
Sbjct: 39 NIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKP 74
>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 237
Score = 31.9 bits (69), Expect = 0.24
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 256 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSP 363
+++ W + G +GTP+ GG Y ++ F + P P
Sbjct: 33 DILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKP 68
>At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 259 LMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKF 378
+ +W I G T EG +Y+L++ D P P +F
Sbjct: 46 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRF 85
>At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 145
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 259 LMTWECAIPGKKGTPWEGGLYKLRMIFKDDXPSSPXKCKF 378
+ +W I G T EG +Y+L++ D P P +F
Sbjct: 45 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRF 84
>At4g13680.1 68417.m02126 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 354
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 202 GPSLWFCREAYEESRWFMNLMTWEC 276
GP L FCR A S W MT C
Sbjct: 164 GPQLSFCRPAQSNSEWINIRMTDPC 188
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 286 GKKGTPWEGGLYKLRMIFKDDXPSSPXKCKFEPPLXHPNV-YPSGTVXLSLL 438
G + ++GG++K+++ + P F + HPNV SG V L ++
Sbjct: 38 GPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVI 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,730,384
Number of Sequences: 28952
Number of extensions: 196828
Number of successful extensions: 457
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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