Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0578
         (675 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004999D1 Cluster: hypothetical protein 10.t00038; ...    35   2.1  
UniRef50_A5JZK0 Cluster: Putative uncharacterized protein; n=1; ...    34   3.6  
UniRef50_UPI00006CB657 Cluster: Ubiquitin carboxyl-terminal hydr...    33   4.8  
UniRef50_Q09F50 Cluster: Ymf71; n=1; Tetrahymena paravorax|Rep: ...    33   4.8  

>UniRef50_UPI00004999D1 Cluster: hypothetical protein 10.t00038;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 10.t00038 - Entamoeba histolytica HM-1:IMSS
          Length = 397

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/64 (35%), Positives = 30/64 (46%)
 Frame = -3

Query: 319 YCDTLVFEQRKSFIVLNKMKTNEYLNRRLRY*KLSFEFTKLN*VIVKNTYTATNFVKETT 140
           YCD L+     SF      K N  LN      K++F FTKL    + +T T T  +K  T
Sbjct: 80  YCDKLLKRDSSSF------KINSLLNFYASRGKVTFLFTKLGEKEISSTKTGTPLLKGNT 133

Query: 139 PFAK 128
           PF +
Sbjct: 134 PFIR 137


>UniRef50_A5JZK0 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 3027

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +3

Query: 165  AVYVFLTIT*FSLVNSKLSFQ*RRRLFKYS-FVFILFNTMKDFLCSKTSV--SQYYIFAF 335
            A+Y F+     S++ S L+   +  LF ++ F F+LF  +   LC+K SV  ++Y++ AF
Sbjct: 2441 AIYSFIDREKESIIASSLNCNVKEYLFNFAYFYFLLFLNLLSRLCNKNSVTYTKYFVKAF 2500


>UniRef50_UPI00006CB657 Cluster: Ubiquitin carboxyl-terminal
           hydrolase family protein; n=1; Tetrahymena thermophila
           SB210|Rep: Ubiquitin carboxyl-terminal hydrolase family
           protein - Tetrahymena thermophila SB210
          Length = 807

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 298 EQRKSFIVLNKMKTNEYLNRRLRY*KLSFEFTKLN*VIVKNTYTATNFVKET 143
           + R+SF + NK++  +  N  +RY K  F+F+K N    K +    N +  T
Sbjct: 418 DSRQSFQMKNKVEQQQSTNPLIRYYKYDFDFSKFNFTFSKRSSAGLNNIGNT 469


>UniRef50_Q09F50 Cluster: Ymf71; n=1; Tetrahymena paravorax|Rep:
           Ymf71 - Tetrahymena paravorax
          Length = 99

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +1

Query: 316 NIISSLFGGKRSFLSK*NENVAFILLVLTVAVHVFFNLTRKFYYYCHTHFIINXFKNF 489
           NII  LF  K++ + K   N+  I+ ++ V  + FFN+      Y + + I+N F NF
Sbjct: 42  NIIILLFKLKQNKIKK-KININIIIFLILVFWNFFFNININIMLYKYINIILNIFYNF 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,298,772
Number of Sequences: 1657284
Number of extensions: 9006005
Number of successful extensions: 14100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14099
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)