Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0578
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    27   2.5  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.5  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   4.3  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 293 LFKNECIAILYLRFSAGKGLSCL 361
           ++ N C AI Y+R++A KG++ +
Sbjct: 138 VYANPCKAITYVRYAASKGINLM 160


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 281 EGFSLFK-NECIAILYLRFSAGKGLSCLNK 367
           E FSLF+  EC +I  L  S G  +SC+ K
Sbjct: 20  EKFSLFQWQECPSIKILHDSVGNKISCIGK 49


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 286 SFIVLNKMKTNEYLNRRLR 230
           SF VL +M TNEYLN  +R
Sbjct: 360 SFPVLKRMITNEYLNSDVR 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,621
Number of Sequences: 5004
Number of extensions: 43739
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)