Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0578
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0342 - 4457825-4460863                                           28   7.8  
04_01_0341 - 4442727-4445597                                           28   7.8  
03_06_0057 - 31326067-31326097,31326453-31326517,31326960-313270...    28   7.8  

>04_01_0342 - 4457825-4460863
          Length = 1012

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 372 KCCLYIISFNGSGSRIFQFN 431
           +CCLY++S N  G  I  +N
Sbjct: 226 ECCLYLLSLNYRGGHIMDYN 245


>04_01_0341 - 4442727-4445597
          Length = 956

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 372 KCCLYIISFNGSGSRIFQFN 431
           +CCLY++S N  G  I  +N
Sbjct: 163 ECCLYLLSLNYRGGHIMDYN 182


>03_06_0057 -
           31326067-31326097,31326453-31326517,31326960-31327032,
           31327134-31327185,31327320-31327366,31327694-31327728
          Length = 100

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 223 FNNEDVYLNTHLFSFYLTR*R-IFFV 297
           F++E+VY NT++  FY T  R IFF+
Sbjct: 65  FSSENVYQNTNIMGFYETGTRQIFFI 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,703
Number of Sequences: 37544
Number of extensions: 204969
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)