Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0574
(360 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 167 2e-42
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 165 7e-42
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 2e-41
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 126 4e-30
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 81 3e-16
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 1e-06
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 39 0.001
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 1.5
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 28 2.0
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 2.6
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23) 27 4.6
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043) 27 6.1
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 27 6.1
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 167 bits (407), Expect = 2e-42
Identities = 77/98 (78%), Positives = 81/98 (82%)
Frame = +1
Query: 67 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQXNRTTPSYVAFTDTERLIGDAXKNQVA 246
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQ NRTTPSYVAF+DTERLIGDA KNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 247 DEPNXTIFDAKRXIGRKFXDATXXADMKHWPFEVVSDG 360
P T+FDAKR IGRKF D DM HWPF V+ +G
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREG 98
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 165 bits (402), Expect = 7e-42
Identities = 75/97 (77%), Positives = 84/97 (86%)
Frame = +1
Query: 67 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQXNRTTPSYVAFTDTERLIGDAXKNQVA 246
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQ NRTTPSYV FTDTERL+GDA KNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 247 DEPNXTIFDAKRXIGRKFXDATXXADMKHWPFEVVSD 357
P TIFDAKR IGR++ DAT +DMK WPF+++SD
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISD 97
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 164 bits (398), Expect = 2e-41
Identities = 76/97 (78%), Positives = 81/97 (83%)
Frame = +1
Query: 67 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQXNRTTPSYVAFTDTERLIGDAXKNQVA 246
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQ NRTTPSYVAFTD ERL+GDA KNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 247 DEPNXTIFDAKRXIGRKFXDATXXADMKHWPFEVVSD 357
P TIFDAKR IGR+F D DMKHW FEVV++
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNE 97
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 126 bits (305), Expect = 4e-30
Identities = 59/90 (65%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Frame = +1
Query: 85 VGIDLGTTYSCVGVFQHGKVEIIANDQXNRTTPSYVAFTDT-ERLIGDAXKNQVADEPNX 261
+GIDLGTTYSCVGVF++G+VEIIANDQ NR TPSYVAFT+ ERLIGD KNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 262 TIFDAKRXIGRKFXDATXXADMKHWPFEVV 351
T+FDAKR IGR + D + D+K +PF+VV
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVV 793
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +1
Query: 73 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQXNRTTPSYVAFTDTERLIGDAXKNQVA 246
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 247 DEPNXTIFDAKRXIGRKFXDATXXADMKHWPFEVVSD 357
P TI+DAKR IG+ F K + F V +D
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTD 126
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 85 VGIDLGTTYSCVGVFQHGKVEIIANDQXNRTTPSYVAFTDTERLIGDAXKNQVADE 252
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ E
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQEKKE 59
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 262 TIFDAKRXIGRKFXDATXXADMKHWPFEVV 351
TI KR IGRKF D ++ H P++VV
Sbjct: 122 TISQFKRFIGRKFSDPAVQKEIPHLPYKVV 151
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1
Query: 136 GKVEIIANDQXNRTTPSYVAFTDTERLI 219
G IIAND +R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 13 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 99
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 145 EIIANDQXNRTTPSYVAFT-DTERL 216
++I N + +RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 95 IWVPRTLALVSSSTGRWRSSPTTXATGPLRLMLRSQTPSVSSEMPXRT 238
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 95 IWVPRTLALVSSSTGRWRSSPTTXATGPLRLMLRSQTPSVSSEMPXRT 238
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
>SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
Length = 880
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 101 VPRTLALVSSSTGRWRSSPTTXATGPLRLMLRSQTPSVSSEMPXRTRWQMN-PTXQYSMP 277
VP A V S S PT A+ P + ++ P+V++ +P Q + PT S+P
Sbjct: 566 VPTVTAFVPSGVDVQGSVPTVTASVPSGVDVQGSVPTVTASVPSGVDVQGSVPTVTASVP 625
Query: 278 N 280
+
Sbjct: 626 S 626
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 101 VPRTLALVSSSTGRWRSSPTTXATGPLRLMLRSQTPSVSSEMPXRTRWQMN-PTXQYSMP 277
VP A V S S PT A+ P + ++ P+V++ +P Q + PT S+P
Sbjct: 651 VPTVTAFVPSGVDVQGSVPTVTASVPSGVDVQGSVPTVTASVPSGVDVQGSVPTVTASVP 710
Query: 278 N 280
+
Sbjct: 711 S 711
Score = 26.2 bits (55), Expect = 8.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 101 VPRTLALVSSSTGRWRSSPTTXATGPLRLMLRSQTPSVSSEMPXRTRWQMN-PTXQYSMP 277
VP A V S S PT A+ P + ++ P+V++ +P Q + PT S+P
Sbjct: 498 VPTVTASVPSGVDVQGSVPTVTASVPSGVDVQGSVPTVTASVPSGVDVQGSVPTVTASVP 557
Query: 278 N 280
+
Sbjct: 558 S 558
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 169 CXGRWR*SPPSRAGRHQRKSTWY 101
C GRW S AG ++KS WY
Sbjct: 3726 CVGRWWKEIKSLAGVSEKKSRWY 3748
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 129 PAREGGDHRQRPXQQDHSVLCCVHRHRASHRRCRQEPGG 245
P R DH R ++ RH A +R +EPGG
Sbjct: 942 PDRHPHDHPDRLTHDRPGLIMGQDRHMADYREPHREPGG 980
>SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)
Length = 801
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 144 HLPVLEDTNARVRGTQIDSYCGXFCHFVF 58
+LP +E +NAR G ++ +Y + FVF
Sbjct: 293 NLPGIEKSNARTMGNRLQAYQSSYQVFVF 321
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 129 PAREGGDHRQRPXQQDHSVLCCVHRHRASHRRCRQEPGG 245
P R DH R ++ RH A +R +EPGG
Sbjct: 75 PDRHPHDHPDRLTHDRPGLIMGQDRHMADYREPHREPGG 113
>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 129 PAREGGDHRQRPXQQDHSVLCCVHRHRASHRRCRQEPGGR*T-QXHNIRCQT 281
P +G H SV C + ++A+ RR R + GG+ + +N+RC T
Sbjct: 461 PRCDGKGHVNGRFASHRSVYGCPNANKAT-RRMRTDSGGKGSGDENNVRCPT 511
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,106,956
Number of Sequences: 59808
Number of extensions: 212897
Number of successful extensions: 495
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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