Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0572
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2J7A9 Cluster: Regulator of polyketide synthase expres...    33   6.3  
UniRef50_Q124P7 Cluster: Putative uncharacterized protein precur...    33   8.4  
UniRef50_Q6C240 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    33   8.4  
UniRef50_A6RFR4 Cluster: Tubulin gamma chain; n=1; Ajellomyces c...    33   8.4  

>UniRef50_Q2J7A9 Cluster: Regulator of polyketide synthase
           expression-like; n=5; Bacteria|Rep: Regulator of
           polyketide synthase expression-like - Frankia sp.
           (strain CcI3)
          Length = 539

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 13  WKPRKISGTPAGKF-GSAIAIGSLLIGAGCGFYFHNASITQNLRRAAEKLYEDPIEEVER 189
           + P + +GTP  +  G+ +  GS L       Y H  ++   LR+AAE    DP +  ER
Sbjct: 459 YAPLRDAGTPLLETTGAYLDFGSSLEATARALYLHTNTVRYRLRKAAEVCGLDPADHRER 518

Query: 190 RLL 198
            +L
Sbjct: 519 FIL 521


>UniRef50_Q124P7 Cluster: Putative uncharacterized protein
           precursor; n=9; Proteobacteria|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 163

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +1

Query: 73  GSLLIGAGCGFYFHNASITQNLRRAAEKLYEDP----IEEVERRLLIASGLPNRTGDQIR 240
           G   +GA     F +AS   N +   E   ++P    + ++   LL+  G+P R G+++ 
Sbjct: 74  GPHTLGASLQKAFTSASAKNNTQAMLEISQKNPGAATLGDIPGFLLLGGGVPVRVGNEVI 133

Query: 241 ALIDGMSAPIGRINRECVIVVI 306
             +    AP G ++ +C +  +
Sbjct: 134 GAVGIGGAPAGNLDEQCAMAAL 155


>UniRef50_Q6C240 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 305

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 10  KWKPRKISGTPAGKFGS--AIAIGSLLIGAGCGFYFHNASITQ 132
           K+KP+K  GTP  K  +   + +G +LI AG   YF +  + Q
Sbjct: 61  KYKPQKYLGTPGKKIATYGTLILGGMLISAGSHVYFASNLVKQ 103


>UniRef50_A6RFR4 Cluster: Tubulin gamma chain; n=1; Ajellomyces
           capsulatus NAm1|Rep: Tubulin gamma chain - Ajellomyces
           capsulatus NAm1
          Length = 655

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
 Frame = +1

Query: 145 AAEKLYEDPIEEVERRLLIAS-GLPNRTGDQIRAL---IDGMSAPIGRINRECVIVVIIG 312
           +A +L+  P EEVE+R++ A+  L NR G QI ++     GM+   G + + C+    +G
Sbjct: 105 SAVELHTTPAEEVEKRMVEATERLINRAGKQIASICLGCAGMAGMDGVVRQGCIRA--LG 162

Query: 313 NVLIKKQVSIQ 345
            VL +K V I+
Sbjct: 163 PVLGEKIVIIE 173


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,080,008
Number of Sequences: 1657284
Number of extensions: 10417645
Number of successful extensions: 24031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24027
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)