Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0572
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.25 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.75 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   2.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   3.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   3.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 518  FICIKNHLVP-NSARGTMKKPEE 583
            ++C+  HLVP N A G    PEE
Sbjct: 1222 YVCVNGHLVPQNCAPGLHYNPEE 1244


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 209 PLAINNLLSTSSMGSSYNFSAA 144
           P++INN  STSS  SS + +AA
Sbjct: 158 PVSINNNTSTSSSASSPSVTAA 179


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 262 RSYHLLGHVSDHQFYLVGRWLSIISFPPLLWD 167
           +SY+ L   + +++Y   + L  I++PP  W+
Sbjct: 22  QSYNFLQEKTTYEYYENNQALPPITYPPSDWN 53


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 262 RSYHLLGHVSDHQFYLVGRWLSIISFPPLLWD 167
           +SY+ L   + +++Y   + L  I++PP  W+
Sbjct: 13  QSYNFLQEKTTYEYYENNQALPPITYPPSDWN 44


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 6   VKVEAKKNIRNSCRK 50
           VKVE ++N  NSC K
Sbjct: 188 VKVENRRNSPNSCEK 202


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 6   VKVEAKKNIRNSCRK 50
           VKVE ++N  NSC K
Sbjct: 136 VKVENRRNSPNSCEK 150


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 6   VKVEAKKNIRNSCRK 50
           VKVE ++N  NSC K
Sbjct: 319 VKVENRRNSPNSCEK 333


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 178 LLWDPHIIFLQLDEDSVL 125
           LLW P +IF+ L ++ ++
Sbjct: 118 LLWTPAVIFVVLSKNGIV 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,845
Number of Sequences: 336
Number of extensions: 2948
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)