Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0572
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0225 - 15390364-15390924,15391231-15391288,15392160-153922...    29   3.4  
11_06_0110 + 20212221-20214011,20214072-20214368                       28   5.9  
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355...    28   7.8  

>07_03_0225 -
           15390364-15390924,15391231-15391288,15392160-15392238,
           15392354-15393167
          Length = 503

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 247 LGHVSDHQFYLVGRWLSIISFPPLLWDPHIIFLQL 143
           +GH+++ QF  V R+   + FPPL   PH+ FL++
Sbjct: 285 IGHLTNLQFLNVKRFC--LKFPPLGQLPHLTFLKI 317


>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 230 SPVLFGR-PLAINNLLSTSSMGSSYNFSAARR-RFCVMLA 117
           S  L+G  P A+ N+LS   +  SYN S +++   C+M A
Sbjct: 285 STSLYGEIPQALGNMLSLQVLDFSYNMSVSKKGNMCIMKA 324


>05_05_0046 -
           21834942-21835055,21835145-21835220,21835297-21835553,
           21835643-21835741,21835820-21836018,21836102-21836315,
           21836470-21836538,21836626-21836950,21837065-21837235,
           21837315-21837479,21837555-21838191,21838258-21838319,
           21838581-21838652,21839256-21839291,21839361-21839489
          Length = 874

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 88  GAGCGFYFHNASITQNLRRAAEKLYEDPIEEVERRLLI 201
           G  CGFY  N  +  + RR    + EDP   + R+ LI
Sbjct: 812 GVDCGFYVFNFMVNYDGRRLLNPITEDPY-YLRRQFLI 848


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,895,924
Number of Sequences: 37544
Number of extensions: 276169
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)