Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0572
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2)                   29   2.6  
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           28   6.0  

>SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2)
          Length = 430

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = -1

Query: 220 YLVGRWLSI---ISFPPLLWDPHIIFLQLDEDSVL 125
           +LVG+W+++    S  PLL++  ++ +Q DED V+
Sbjct: 334 WLVGQWVNVKLTASVRPLLYESLLLLMQKDEDLVM 368


>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 115 NASITQNLRRAAEKLYEDPIEEVERRL-LIASGLPNRTGDQIRALIDGMSA 264
           NA + +NLR A EKL E    E+++ L  + SG  N + +Q+R L   + A
Sbjct: 728 NAQLRRNLRMANEKLQEQ--REIQQSLEELKSGHTNVSFEQVRQLKSELEA 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,464,794
Number of Sequences: 59808
Number of extensions: 322439
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)