Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0572
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084149-1|AAL89887.1|  499|Drosophila melanogaster RE29709p pro...    30   2.5  
AE013599-2536|AAF57813.3|  499|Drosophila melanogaster CG14485-P...    30   2.5  
AE014298-3101|AAN09669.1|  262|Drosophila melanogaster CG32523-P...    30   3.3  

>AY084149-1|AAL89887.1|  499|Drosophila melanogaster RE29709p
           protein.
          Length = 499

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 226 QFYLVGR-WLSIISFPPLLWDPHIIFLQLDEDSVLCSHYENKSHILLLLISYR*QL 62
           Q YL G  W    +F  LL  P    L +D D ++C+  + K   +L+++ Y+ +L
Sbjct: 204 QLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQMLMVMHYKLEL 259


>AE013599-2536|AAF57813.3|  499|Drosophila melanogaster CG14485-PA
           protein.
          Length = 499

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 226 QFYLVGR-WLSIISFPPLLWDPHIIFLQLDEDSVLCSHYENKSHILLLLISYR*QL 62
           Q YL G  W    +F  LL  P    L +D D ++C+  + K   +L+++ Y+ +L
Sbjct: 204 QLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQMLMVMHYKLEL 259


>AE014298-3101|AAN09669.1|  262|Drosophila melanogaster CG32523-PA
           protein.
          Length = 262

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 31  SGTPAGKFGSAIAIGSLLIGAGCG 102
           SG PA   G  + + SLL+G GCG
Sbjct: 216 SGGPATYGGKVVGLASLLLGGGCG 239


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,092,483
Number of Sequences: 53049
Number of extensions: 478591
Number of successful extensions: 927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)