Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0572
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26990.1 68416.m03377 expressed protein contains Pfam domain,...    30   1.6  
At5g20140.1 68418.m02397 SOUL heme-binding family protein contai...    29   2.1  
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z...    29   2.1  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   5.0  

>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 513

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 121 SITQNLRRAAEKLYEDPIEEVERRLLIASGLPNRTGDQIRALID--GMSAPIGRINRECV 294
           S+  +LR A ++  E  +E+V   L IA    +RTGD  R L+D  G S P      E  
Sbjct: 239 SLISHLREALQE-QELKLEQVRNHLQIARFQSDRTGDLCRQLLDHGGSSQPPATEEEESK 297

Query: 295 IVVIIGNVLIKKQ 333
            V+ + +     Q
Sbjct: 298 EVIKVSSTAAAPQ 310


>At5g20140.1 68418.m02397 SOUL heme-binding family protein contains
           PFam profile PF04832: SOUL heme-binding protein
          Length = 378

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = -1

Query: 223 FYLVGRWLSIISFPPLLWDPHIIFLQLD------EDSVLCSHYE 110
           + +  RW  ++ F PL W P ++F  L       E +  CSH +
Sbjct: 131 YEITTRWTMVMKFIPLPWKPELVFTGLSIMEVNPETNKFCSHLD 174


>At1g51550.1 68414.m05802 F-box family protein similar to F-box
           ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
           [Arabidopsis thaliana]
          Length = 478

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 10  KWKPRKISGTPAGKFG-SAIAIGSLLI 87
           KWK  K SGTP+G+FG + I IG  L+
Sbjct: 165 KWKKVK-SGTPSGRFGHTCIVIGEYLL 190


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 101 PHPAPINKLPIAIALPNFPA---GVPDI 27
           P+P+P+  LPI   LPN P     VPD+
Sbjct: 193 PNPSPLPNLPIVPPLPNLPVPKLPVPDL 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,375,460
Number of Sequences: 28952
Number of extensions: 232919
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)