Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0568
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    24   0.67 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   8.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 314 PIALSTK*LYHSFFFNYYYY 255
           P+ALS K   ++  FNYYYY
Sbjct: 51  PLALSNK---NAIDFNYYYY 67


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 157  FSFEYWINFGVP 122
            FS  YWI+ GVP
Sbjct: 1621 FSINYWISEGVP 1632


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 287 YHSFFFNYYYYKNLIVY*IFLYMNRSIFKY 198
           Y++FF  +  Y  +I+Y I +   +S+F +
Sbjct: 117 YYAFFGVHLAYGVVIIYSICVQTEKSVFDF 146


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 357 LTAHVMRCINGIAHSYCTL 301
           LT   +RC+NGI  S  TL
Sbjct: 132 LTVSGLRCVNGIPVSSKTL 150


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 357 LTAHVMRCINGIAHSYCTL 301
           LT   +RC+NGI  S  TL
Sbjct: 132 LTVSGLRCVNGIPVSSKTL 150


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 205 LSTILSRNYVRLEGLGFSFEYWINFGVPVN 116
           L  ++ R Y   E + +   YW+  G P N
Sbjct: 256 LYELIDRKYD--ENVDYQVRYWLQKGAPNN 283


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 208 YLSTILSRNYVRLEGLGFSFEYWINFGVPVN 116
           Y + I  +   ++   GFS+ + +N  +PV+
Sbjct: 389 YFAYIFGKFACKIMIQGFSYAFPVNLTIPVS 419


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 208 YLSTILSRNYVRLEGLGFSFEYWINFGVPVN 116
           Y + I  +   ++   GFS+ + +N  +PV+
Sbjct: 389 YFAYIFGKFACKIMIQGFSYAFPVNLTIPVS 419


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 208 YLSTILSRNYVRLEGLGFSFEYWINFGVPVN 116
           Y + I  +   ++   GFS+ + +N  +PV+
Sbjct: 389 YFAYIFGKFACKIMIQGFSYAFPVNLTIPVS 419


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 208 YLSTILSRNYVRLEGLGFSFEYWINFGVPVN 116
           Y + I  +   ++   GFS+ + +N  +PV+
Sbjct: 389 YFAYIFGKFACKIMIQGFSYAFPVNLTIPVS 419


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,840
Number of Sequences: 336
Number of extensions: 1950
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)