Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0568
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   2.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   8.5  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   8.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 116  LRTLHFWIALLCYLTFFLSHFACF 45
            L ++ FW+ L+C L+  + +F  F
Sbjct: 2366 LASIPFWVCLICQLSVIIGYFLFF 2389


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 384 RGDSVMALQPQXFCVRXNSYHTNLQAXFPRLLLTEQFR 497
           RG  ++A  P    V       NL+  +PR+++ +  R
Sbjct: 643 RGSKIVASMPSKMAVVLQMPRGNLETIYPRIMVLDGVR 680


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 115 NLRAHQS*SSIQKKTRDL 168
           NL++HQS SS+Q  +R L
Sbjct: 280 NLKSHQSSSSVQNSSRKL 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,754
Number of Sequences: 5004
Number of extensions: 31509
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)