Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0568
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   27   6.6  
SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)                       27   6.6  
SB_56088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_42174| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 107 LHFWIALLCYLTFFLSHFACFSLCADTR 24
           L  WI +LC+  + L H +  S+C D R
Sbjct: 462 LSSWIPILCFSVYELVHTSRVSVCKDLR 489


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 406 SAITESPRPEYTKSFSTNRSRYAVYK 329
           +AIT+ P P Y K    NR++Y V +
Sbjct: 491 AAITKDPSPTYYKGVCLNRTKYFVIR 516


>SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 604

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 405 APSRNHLDRNTLNHLALTAHVMRCINGIAHS 313
           APS +  D+ T  HL+ +++++  +  IAH+
Sbjct: 102 APSTDGKDKETSTHLSYSSYLINAVYAIAHA 132


>SB_56088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 93  YPKVKCSQFTGTPKLIQYSK-ENPRPSSLT*FLLSIVLKYTSI 218
           YP+    Q+T    + +++   NPRPS  T  L+S++ K T I
Sbjct: 126 YPRKGFGQYTNKDPVDKHNPLHNPRPSPPTARLISLLTKQTHI 168


>SB_42174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 93  YPKVKCSQFTGTPKLIQYSK-ENPRPSSLT*FLLSIVLKYTSI 218
           YP+    Q+T    + +++   NPRPS  T  L+S++ K T I
Sbjct: 13  YPRKGFGQYTNKDPVDKHNPLHNPRPSPPTARLISLLTKQTHI 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,925
Number of Sequences: 59808
Number of extensions: 225532
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)