Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0568
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          32   0.004
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.26 
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      26   0.26 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   0.59 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   5.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   5.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   5.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   5.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 414 QXFCVRXNSYHTNLQAXFPRLLLTEQF 494
           Q +C+R N+Y +N+ + F +LL TE F
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAF 35


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 414 QXFCVRXNSYHTNLQAXFPRLLLTEQF 494
           Q FC+R N+Y +++ + F  L   E F
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDF 31


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 414 QXFCVRXNSYHTNLQAXFPRLLLTEQF 494
           Q FC+R N+Y +++ + F  L   E F
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDF 31


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 275 FFNYYYYKNLIVY*IFLYMNRSIFKYDTK 189
           F NY+++  L++  IFLY   +  K D +
Sbjct: 2   FKNYHFFFILVITLIFLYFGEADIKKDCR 30


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 215 YSYTKIFSIQLNFYNNSN*KK 277
           Y Y+   +   N YNN+N KK
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK 109


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 215 YSYTKIFSIQLNFYNNSN*KK 277
           Y Y+   +   N YNN+N KK
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK 109


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 215 YSYTKIFSIQLNFYNNSN*KK 277
           Y Y+   +   N YNN+N KK
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK 109


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 215 YSYTKIFSIQLNFYNNSN*KK 277
           Y Y+   +   N YNN+N KK
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK 109


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 224 TKIFSIQLNFYNNSN*KKNCDI 289
           T+ F + L FY     KKN ++
Sbjct: 79  TEAFEVDLEFYLGKEWKKNLNL 100


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
          protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 41 LCADTRIN 18
          LCADTR+N
Sbjct: 68 LCADTRLN 75


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 248 NFYNNSN*KK 277
           N+YNN+N KK
Sbjct: 316 NYYNNNNYKK 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,395
Number of Sequences: 438
Number of extensions: 2328
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)