Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0568
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putative si...    30   1.0  
At3g02490.1 68416.m00237 pentatricopeptide (PPR) repeat-containi...    27   7.2  

>At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putative
           similar to beta-ketoacyl-CoA synthase [Simmondsia
           chinensis][GI:1045614]
          Length = 529

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 129 PKLIQYSKENPRPSSLT*FLLSIVLKYTSIHIQKYLVYN 245
           P  +  ++ NP P++L  FLLS+ LKY  +    YL+ N
Sbjct: 13  PVHVTNAEPNPNPNNLPNFLLSVRLKYVKLGYH-YLISN 50


>At3g02490.1 68416.m00237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 373 TKSFSTN-RSRYAVYKRNCTFLLHSPL 296
           T+SFS+    R+ V +R C F L SPL
Sbjct: 34  TRSFSSFLHERFGVQQRQCLFALRSPL 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,782,818
Number of Sequences: 28952
Number of extensions: 150113
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)